| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1103 |
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| Symbol | |
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| ID | 8252197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1290121 |
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| End bp | 1292088 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644934754 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_003091383 |
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| Protein GI | 255531011 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00448794 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000000241277 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAAT CGATTTTTAA ACCCTTATTC GTGCTGTTGT TTTTGTGTGT ATCGTTATTG
GCACAGAAAC CGGTTTTTGG ACAGCAAAGT CAGCAGGAAC GGATGGAAAC CCTGGAGAAA
AAACTGGTGG GACTTTCGGC CTTTGTACCC GGCTTAAAGC AAAAGGTGCA GCTGGGGCTG
TCGGGTGCCT CCATTCAGGA GTTTTTAAGG GCGGTGGCCC AGGCCAATCA GCTCAACATC
AATGTAGACC CGATGCTGAA CATCAAGGTG TCGAACAATT TTACCAATGA GAATGCCTTG
AATGTGCTGC TTTTCCTGGC CAAAAATTAT AACCTGGAAG TGAACGTGAT CGGTTCTATC
ATTACGGTTG GGCCCTATAA CCCACCGGTG ATCAAAGCCC CTTATGTGCC AAAAGTAATT
GCCCTGAAAT ACAATGCGGC TGCAAATACC CTATCGATGG AACTCAGCAG CGACAGCCTG
GTGCTGGTGG CCCGCAAGAT CAGCCAGCTT TCAGGAAAAA ATATTGTGGT GCCGGTAAGT
TTAAACAGCA AACTGGTAAG CAGCTTTTTT AACGAGGCCC CATTGGAGAC GGCCCTGGAA
AAACTGGCAT TTGCCAATGA GCTGAAGCTG ACGAGGACCA GCGACAATGT ATATGTTTTT
CAGGCCCTGG AGGAAGGGGA AGAAGTTTTT ATCAATGCAG ATAAGGACAC TGACATCAGG
AAGAACCTGA AACCAGCCGC CGGGGCCGGG GCTGCTAAGG GCACGTTTAA TGTTTCAGGA
AAAAGCGATA AAAACATTAA AAGTGGTAAG CTGCTGAACA TTGATGCCAT CAATACCCCG
ATCATAGACC TGGTGAAATC GGTCGCTAAC GAGACGAATA TCAACTTTTT CCTGTATTCG
GAACTGAAAG GGAACATCAG CACCAAGGTG AACAACATTA CCTTCGATAA TTTTTTGACG
GCGATGTTTA ACGGAACGGA TTATACCTAT AAAGTGGATA ATGGAGTATA CCTGATTGGC
GACAGGAAAC TGGAGGGGCT GCGCAAGAAC AAAGTACTGC AATTGCAGTA CCGGTCTGTA
GATACGATCA TGAACATGAT CCCTATGGAA TGGAAAAAGG GGGTGGACAT TAAGGAGTTT
AAGGAGCAGA ACACCTTGCT GCTTTCCGGT TCGGCCCCGC AACTTGCGGA AATTGAGACC
TACATCAGGG AGCTGGATAA ACTGGTGCCG ATGGTGCTGA TTGAAGTGAC CCTGCTGGAT
ATCAGGAAAG GGCATACCAC CAAGACCGGC ATAGAAGCCG GACTGGCAGA TTCGGTGGTG
CGGACCAGGG GTACTGTGCT GTCGGGTGTG GACATGACCC TGGGTGCAGG TTCTATCAAT
AACCTGCTCG GAAAAATTGG CTCCAACAGT GTATTTAATA TCGGAAAGGT AACCCCCAAC
TTTTACGTGA AACTAAATGC ACTGGAAGCC AACAACAATA TCGAGATCAG GCAGGTGCCC
AAACTGGCCA CCCTGAATGG TCATACGGCC AATTTAAGTA TAGGCACCAC CCGGTATTAC
GTGACCAAAA CGCAGAACGT GTTTTCATCG GTTAATACCC AAACGGTATT TACCGAACAG
TTTAACAAGG TGGATGCCAA CCTGGCCATT GGCATTAGTC CCGTGGTTTC GGGTGATGAC
CAGGTGACCC TAAAAATTAA GGTAGAGATA TCTGACTTTA TTGGTACGCC GCCCGCAAAT
GCACCGCCAC CGACATCGAC CAGTAAGTTT GAGTCGATTA TCCGGGCACA TAACGAGGAT
ATGATTGTAC TGGGTGGTAT GGAAAGGTCG GAAAAATCGG ATAGTGGAAG TGGCGTACCC
CTGTTGTCGC GTATACCGGT CCTGAAATGG ATATTTAGCA GCAGGGAGCA AACGAAATCG
AAGGTAGTAA CGCTGGTCTT TATTAAACCG ACCATAATTT ATCAATAG
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| Protein sequence | MKKSIFKPLF VLLFLCVSLL AQKPVFGQQS QQERMETLEK KLVGLSAFVP GLKQKVQLGL
SGASIQEFLR AVAQANQLNI NVDPMLNIKV SNNFTNENAL NVLLFLAKNY NLEVNVIGSI
ITVGPYNPPV IKAPYVPKVI ALKYNAAANT LSMELSSDSL VLVARKISQL SGKNIVVPVS
LNSKLVSSFF NEAPLETALE KLAFANELKL TRTSDNVYVF QALEEGEEVF INADKDTDIR
KNLKPAAGAG AAKGTFNVSG KSDKNIKSGK LLNIDAINTP IIDLVKSVAN ETNINFFLYS
ELKGNISTKV NNITFDNFLT AMFNGTDYTY KVDNGVYLIG DRKLEGLRKN KVLQLQYRSV
DTIMNMIPME WKKGVDIKEF KEQNTLLLSG SAPQLAEIET YIRELDKLVP MVLIEVTLLD
IRKGHTTKTG IEAGLADSVV RTRGTVLSGV DMTLGAGSIN NLLGKIGSNS VFNIGKVTPN
FYVKLNALEA NNNIEIRQVP KLATLNGHTA NLSIGTTRYY VTKTQNVFSS VNTQTVFTEQ
FNKVDANLAI GISPVVSGDD QVTLKIKVEI SDFIGTPPAN APPPTSTSKF ESIIRAHNED
MIVLGGMERS EKSDSGSGVP LLSRIPVLKW IFSSREQTKS KVVTLVFIKP TIIYQ
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