| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1074 |
|---|
| Symbol | |
|---|
| ID | 8252168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1262007 |
|---|
| End bp | 1265579 |
|---|
| Gene Length | 3573 bp |
|---|
| Protein Length | 1190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644934725 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003091354 |
|---|
| Protein GI | 255530982 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.240766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.107047 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAA TTTCTACCAG ATATGGTATG CCGAGGGGCT ACCTTATAAA ACTACCTGTA
ATTAAAAGAA AATGGCTTAT GCGAGTTAAC TTGATCATAC TCTTATTAAT TACTACGCTG
ATGCAGGTAG GCGCAGCTAC TTTTGCCCAA AAAGTGACAC TGAAAGAGAA TGGGCTTACC
ATGGAACGGA TGTTTAAGGA AATAAGAAAA CAAACCGGCT ATGATGTTTT GATGAGGAAT
ACAAGTTTAA AAGGGCTAAA AGTTAATGCA AATTTTCAGG ATACCCCTTT AGAAAAAGTA
ATGGATTTCC TGGTTCAGGG AACCAATTTG ACCTATAGCA TTGAGGAAAA AACAATTGTT
ATAACTGAAA AATCTCCCTC TTTTATAGAC CGGGCCAGGA ACGTCATCTC GAATATTGTG
AGAGATCTAA CTGTAAAAGG AAAGGTAACA GACCAGGATG GGAAGCCGCT CCCAAACGCA
AGTATCCGGG TAAAAGGGAG AAGTGCTGTT ACGAATACTA ACCAGAATGG TGAGTTTGAG
CTTAAAGGCG TGGATGATGA TGCGGTGTTA TTAGTGAGTT ATGTGGGGTT TAAGCCCTTG
GAGATTAGTT TGAAGGATGC GTTGATGCCC TTGGAAATTA AGTTGAATAT TCAGACTGGG
GAGTTGGAGG AAGTAAAAGT GGAATATAAT ACTGGTTACC AAAAAATCCC TAAAGAAAGG
GCTACTGGCA GTTTTGTGTT TATTGATAGT GCAACGATTA ACAGAAGGGT GGGTGGAAAT
ATTTTGGCGA GGTTAAAAAA TCTTGTGCCA GGATTGCTGT TTGATAAAAG CTCGACAGAG
GCTGGGAAGG AAAGGCTTCA GCTTAGAGGA ATGTATTCCT TCTCTGAATC AATGGCAATA
CCATTAATCG TTGTCGATAA TTTTCCTTAC GAAGGAGACA TAAATAACAT CAATCCTAAT
GATGTAGAAA ACATCACTAT TTTGCGTGAT GCGGCGGCCG CGTCCATTTG GGGTGCAAAA
GCGGGTAACG GGGTAATTGT GATTACTACC AAACAAGGTA AATTTAACCA AAAAGCAGAG
GTTTCTATAA CTTCAACTAT TTCTTTGGCT GGAAAACCCG ATCTCTTTAA ACTCCCTATT
GTATCCTCTG ATGTAATTGT TGATCTGGAA CAATTTCTTT ATGAAAGAGG TACTTACAAT
TACGGCTTAA GTGATCCATA TATCCCAGTG TCTAAAGTGG CTTTGATTTT AGACGAGTTA
AAAGCAGGGA AGATATCAGA CGAAGAATCA GAACGTCAAT TGAACATATT GAGAAATACA
GATATAAGGA ATGATTTATT AAAATACAGT TATAGAAATA GTGTGAATCA GGGTCATGCT
TTAAATATTT CGGGAGGCTC CAATGCCATC AAATATTTCA TATCTGCGGG ATACAATAAA
GACTTAACCT CCCTTAAGCG TGATGACAAT ACTCGATTTA CATTAAGTTC AAATAATACA
ATTCAGTTGG CCAAGAATCT TGAAATGCAA ACTAGTGTTA ATTTTATTAG TGGTCAAATT
TCAAACAACA ACACGGTTGA ATATGGTAAA GGCACATTAA ATGTTCCAAA TTATTATAAC
CTTTCGGATG CTGAGGGCAA TTCACTATCG ATACCATATT ATTTTAAGCA ATCTTTTTTA
GATACTGCTG GACGAGGAAA GTTGTTGGAT TGGAGTTATA GACCACTTGA CGAATTGAGA
AATAATGATA ACACTCTTAG AAGCCACACT TTTATAGGTC GTGTCAATCT GAAGTTCAAC
ATTTTAAAAA CACTGAAGCT TAGTGCAGAT TATCAATACT CAAAGGGTAC AGTATCGAAT
CGTACATACA ATTCCATTGA TTCATACTTT ACTAGGGACT TGATAAATAT GTTCTCCAAT
CTTCAAGCAA ATGTGTCGAG TGATAAAAAG TACCCCGTAC CAATGTCTGG AATTCTTGAC
CTAACGAATA GTGAGCTTTC AACTCAAAAC TTGCGCTCTA ACCTTAATTT TAATCAAAGC
TGGTGCAATA GACATGAACT GAATTTTACT GGGGGAGCAG AGCTTAGTGA AAAGAAAACG
AGCTTCTATG CAAATCGTAG TTATGGTTAT AACAAGGAAT TGTCGGTAAC TTCCAATGTA
GACTTCATCA ATCCATACCC TACCTATTAT GGCTTTTTAT TTCAAATTCC AGACATTGGC
GGTAACAAAA TTAATTCTCA AAATAATCGG TTTGTTGCAT TATATGCAAA TAGTTCCTAT
ACGTACAATA ATAAATATAC TATTTCAGGA AGCATTAGAA AGGATGCGGC TAATTTGCTT
GGTGTGAATA CCAATCAAAG AGGAAGGCCA TTCTGGAGTA CAGGTTTATT ATGGAAGATT
AGCCAAGAAC AATGGTATTC ATCGGCTATC CTACCTTCGC TTAGTACAAG GATGAGCTTT
GGTAATGGTG GAAATACACG CTTTAATGGT TCTGCGTTGA CAACAATTAA CTATTTGCCA
TCATCTCTTA ATCCGAGTAT TAATTTGCCC TCAGCTAGAA TTAGTGGGAA TGGCAATCCT
GATCTAAGAT GGGAAAAAGT AGCCCAATTA AATATCGGGA TAGACTTTGG CTTTAAAAAT
GATATCGTTT CAGGAAGTAT TGAATACTAT AAAAAAAAAT CAACAGATGT TTTAGCTTTT
CGACCTCTCG ATCCGACAAC AGGTATACTA TCAATCACCT CAAATTCTGC AAGTATAAAA
GGGAGTGGCA TAGATCTAAA GGTTAACGCT AACCTAATTA GATCTACAGC TTTTAACTGG
TATCTAGCCG GAAACTTTAG CACAGCTAAA TTTCTCGTAA ATGAGTATTT GTATGAGCAG
GATTTAACAA GTAAGATACT AAACGGGACG CTTGATCCCA TAAAGGGGTA TACTCCATAT
TTACTGACTA GTTATAAGTG GATGGGCCTG GATCCAAAAA ACGGCGATCC GCAAGGTGTA
TTAGATGGTC AAGTCAGTAA AGATTGGGAT AAAATAACAA ATTCTACTCC ATTTGATGGG
ATAGTTAAAC ATGGTTCAGG AGTTCCTACA TCATTTGGAA ATTTAGTGAA TAGTATTTCT
TATAAAAGCT TTACATTTTC GGCCAATTTG ATTTATAAAT TTAATTACTA TTTCAAAAGC
CCTCAATATT CGGCTAATCA ACAACAACAA ATTGGTATAA CCAGTTTAAG CGATGAATAT
AATAAAAGGT GGCAAGCGCA AGGAGACGAA AAGCATACAA ATGTCCCTTC ATTCTCATAT
CCTACTCCAA TAAGTAGAGA TATATTTTTT AACAGTTCAG AAGCACGTGT TGAAAAAGGT
GATCATATCA GAATTGACGA CTTTTCTTTA TCCTATATCA TTAATAAGTC TGCATTTAAG
ATGCTCCCAT TTAAAAGTCT TGGCTTAACC GCAAATGTTT CTAACCTGAA TTTAATTTTA
TGGAAAGCTA CGAAAACAGA TCTCGACCCG GAAAATCCGG GAGGAAATAT TGCTGGTAAA
ATCGTTTCTC TTGCTGCTAA TATAATTTTT TAA
|
|---|
| Protein sequence | MYKISTRYGM PRGYLIKLPV IKRKWLMRVN LIILLLITTL MQVGAATFAQ KVTLKENGLT
MERMFKEIRK QTGYDVLMRN TSLKGLKVNA NFQDTPLEKV MDFLVQGTNL TYSIEEKTIV
ITEKSPSFID RARNVISNIV RDLTVKGKVT DQDGKPLPNA SIRVKGRSAV TNTNQNGEFE
LKGVDDDAVL LVSYVGFKPL EISLKDALMP LEIKLNIQTG ELEEVKVEYN TGYQKIPKER
ATGSFVFIDS ATINRRVGGN ILARLKNLVP GLLFDKSSTE AGKERLQLRG MYSFSESMAI
PLIVVDNFPY EGDINNINPN DVENITILRD AAAASIWGAK AGNGVIVITT KQGKFNQKAE
VSITSTISLA GKPDLFKLPI VSSDVIVDLE QFLYERGTYN YGLSDPYIPV SKVALILDEL
KAGKISDEES ERQLNILRNT DIRNDLLKYS YRNSVNQGHA LNISGGSNAI KYFISAGYNK
DLTSLKRDDN TRFTLSSNNT IQLAKNLEMQ TSVNFISGQI SNNNTVEYGK GTLNVPNYYN
LSDAEGNSLS IPYYFKQSFL DTAGRGKLLD WSYRPLDELR NNDNTLRSHT FIGRVNLKFN
ILKTLKLSAD YQYSKGTVSN RTYNSIDSYF TRDLINMFSN LQANVSSDKK YPVPMSGILD
LTNSELSTQN LRSNLNFNQS WCNRHELNFT GGAELSEKKT SFYANRSYGY NKELSVTSNV
DFINPYPTYY GFLFQIPDIG GNKINSQNNR FVALYANSSY TYNNKYTISG SIRKDAANLL
GVNTNQRGRP FWSTGLLWKI SQEQWYSSAI LPSLSTRMSF GNGGNTRFNG SALTTINYLP
SSLNPSINLP SARISGNGNP DLRWEKVAQL NIGIDFGFKN DIVSGSIEYY KKKSTDVLAF
RPLDPTTGIL SITSNSASIK GSGIDLKVNA NLIRSTAFNW YLAGNFSTAK FLVNEYLYEQ
DLTSKILNGT LDPIKGYTPY LLTSYKWMGL DPKNGDPQGV LDGQVSKDWD KITNSTPFDG
IVKHGSGVPT SFGNLVNSIS YKSFTFSANL IYKFNYYFKS PQYSANQQQQ IGITSLSDEY
NKRWQAQGDE KHTNVPSFSY PTPISRDIFF NSSEARVEKG DHIRIDDFSL SYIINKSAFK
MLPFKSLGLT ANVSNLNLIL WKATKTDLDP ENPGGNIAGK IVSLAANIIF
|
|---|
| |