| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1036 |
|---|
| Symbol | |
|---|
| ID | 8252130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1209422 |
|---|
| End bp | 1212712 |
|---|
| Gene Length | 3291 bp |
|---|
| Protein Length | 1096 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644934689 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003091318 |
|---|
| Protein GI | 255530946 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTTAA AAAAGGGGTT TGTCATTTTT ATTTTATTGG TACTCAGTGT GGCCGTAAAG
GCCCAGAAAC TCAATTATAC ACAAAAGAAT GTTTCCCTGG TAAGGCTTTT TAAGGAGATC
AAACAGCAGA CCGGTTTTAG TGTGGCCTGG AATGAAAAGG AATTCAATGT GAACCAGCGC
ATAGACATCA GCTACAAGGA TGCCGATGTT AAGAAAGTAA TGGATGACAT TTCGGCCCGA
CTCCAGCTTA GTTATACCAT TATGGGTAAG GCAATTATTG TAAAAGATAA AAGACCTGCA
GCAGGTATTG ACCAAACCAC AAATCCTAAA CCCGCGAATA ATCCTATCCC TATTGTTCAG
GAAAGGGAAT TTTTCCTGCA ACAGGTTGAA ATTGTAAGTA CAGGTTATCA AAACATCCCT
AAAGAACGCG CAACAGGAAG TTTTGCACTC GTAGACAGTG CGCAACTAAA CCGGAGGGTT
AGTCCTGATA TATTTAGCAG GCTGGAAGGT ATAACCAGTG GTTTGCTGTT CAATAAAAAT
ACAGTAAACA GCAATTCTGG TAATTTGGAT TTATCTATAA GGGGCAGAAG TACAATTTTT
GCAAATGATC AGCCCCTGAT TATCCTGGAT AATTTTCCTT TTAATGGTGA TTTCAATTCC
ATCAACCCGA ATGATCTGGC CAATATTACG GTATTGAAGG ATGCAGCAGC AGCTTCTATC
TGGGGCGTAA GGGCTGGAAA TGGTGTAATC GTGATCAGTA CCAAACGGGG AAAGACCGGA
CAAGCATTAA ACATTTCTTT AAATACCAAC ATTACTGTTG CAGGCAAACC GGATGTTTTT
TACAATCCGA ACCACCTGTC TTCATCGGAT TTCATCGATA TTGAAACTTT TCTGTTTAAC
AATGGAAAGT ACGATGCTGC ATTGACAGAC CAGGTTAATT ATCCGGTTGT TTCGCCGGTA
GTGCAAATCC TGAACAAACA AAGGCAGGGA CAGTCTGCCG CCGAAACGGA AAAACAATTA
AATGCCCTGC GTGGAAATGA CATCCGTAAT GAAGAGTTGA AATACTTTTA CCGCAAACCG
GTTTCCCAGC AATATTTTTT GAATGCAAGT GGCGGAACAG CTAGATCGAG TCACTATTTT
TCACTGGGCT ATGACAAGAC ACTTTCCAGC CTGGTTAACA ATGACAATGA CCGGATAACC
ATCAATAGTC AAAATACCTT CAGGCCAATA AAGAACCTGG AAATTGAAGC TGGTTTTAAC
TATACAAGGA TTGCATCAAG AGTGGACAGT ACCATACGAG AAACCTCTGA TGTCAATTTT
ACACCTTATT ATCAGTTCAG GGATGCCAAT GGCAATCCAA CTGTATTTGA TAAGAACTTC
AGCGCTGATT ATAAACAACA GGCGTTGACA AAGGGATTTC TGGATTGGTC TTATGTACCT
TTAACCGAAC TGGGAAAATC TCCATTTATA TCAAAAAATA ATGATGTTCG TGTAAATGGT
GCTTTGAAAT ATACCATAAT ACCCGGCTTA AGTGCCGCAC TAAAATACCA GTACCAGTTG
CTTGACAACA AAACCGAACG TTACAATAGT TTAGAGACTT ACCAGAGCAG GAACCTGATC
AATCAATATT CTGTTTTGAC TTCAGACAGG GTAAGCGGGT ATCATATTCC ATTGGGCGGA
ATTCTTTATA GTGCAAATGG CAAAGCTGTT TCCAATAATT TTCGGGCTCA GCTGGCTTAT
CAGAGAGATC TACAAAATTC TGCAGTTTCG GCTATATTGG GTTATGAATT GTCAGAATTT
TCTTCTGATA TCAGTGACCA TTTTGATTAT GGTTATGATC AGAAAACAGG TACATCCATA
CCTGTTGACT CTACAAGTAC CTTTAATTTA AACCCTTCAG GTACGGGTAA AATCAATACC
GGAGTTGCGC CTTTTGGAAA GCTGGACAGG ATCAGGTCTG TGTTTGCCAA TCTAGCTTAC
AGTTTTAACA ACAAATACGT ATTATCGGCT AGTGCCAGGA TTGATGGATC GAATTATTTT
GGGGTAAAAA CCAATCAGAA AAATGTCCCG CTCTGGTCGG CCGGTGCTTT ATGGAACGTA
GACAGGGAAA CTTTTTATCA GCTAAACTGG TTACCCATTT TAAAATTAAG GGCTTCTTAT
GGTTACAATG GAAACCTGGA TAAATCGAAT ACCGGAATTA CTACTTTCCG GTACAATGGA
ATAGGCGCGC TTTACACCGG GCTGCCCAAC GCGGGAATCC TTAATATTGG GAATCCCGAG
CTGCGCTGGG AGAAAATTGG TATTGCCAAT TTCGGGATTG ATTTTGGCCT GAAAGATCAG
ATTGTTACAG GAAAACTGGA ATACTATTTT AAAAACGGAA CGGATATTTT AGGCGATAAG
GCTTTTGCTT CGAGTACAGG GATCAAAACC TTAAGAGGAA ATTATTCGAA AATGAAGGCC
AATGGCATGG ATGTTTCTTT AATTTCACAA AATTTAAGAG GTGAACTGAA ATGGACTACT
AACTTTTTGT TTTCATTTGT ACACGATAAA GTGACTTCTT ACGATGTGAT AGAGCCAAGA
AGTGCTTATT ATGTGGGGAC TTATAGCACC AAACCTGTAT TGGGAAGGCC AGTATATGGA
ATTTATAGCT ACAAATGGGC GGGGCTTGAT CCGGAAAATG GTGATCCGCG TGGTTATTTA
AATGATGAGG TCAGCAAAAA TTACAGTACA ATTGTCAATA CCACTTCTGT AAATGATCTG
GAATACAACG GGCCGGCAAG ACCAACTGTA TTCGGTGGCT TAAACAATAT TTTTTCTTAT
CGTAAGTTTA CTTTGGGTTT TAACATCAGC TATAAACTAG GCTATTATTT CAGAAAACCT
AGTATAAATT ATACAAACTT ATATACTGGC AATATGGGAT TCTTTATGAA TAGGGATTAT
GAGAACCGCT GGCAAAAAAC CGGGGATGAA CTGATTACCA ATGTACCATC TATGGCCAGT
TATGCAACAG ACAGTTTCAG GGATATTTTT TATAACAATT CTTCTGTTAC AGTTGCCAAA
GGAGATCATA TCCGTTTGCA GGATGTGAGC TTGAGCTATG ACCTTGATCA AACCAACTGG
AAAAGGATAC CTTTTAAAAA AGTTCAGCTT TACTGTTATG CCAGTAATCT GGGAATGATC
TGGAAGGCAA ATGATTTCGG ATTAGACCCG GATGTGATTC CGCTTATTAA GGAAAGATTG
TCCAATCCCC TATCCAAAAG TTTTGCTTTT GGATTAAAGG CAAATTTTTA A
|
|---|
| Protein sequence | MHLKKGFVIF ILLVLSVAVK AQKLNYTQKN VSLVRLFKEI KQQTGFSVAW NEKEFNVNQR
IDISYKDADV KKVMDDISAR LQLSYTIMGK AIIVKDKRPA AGIDQTTNPK PANNPIPIVQ
EREFFLQQVE IVSTGYQNIP KERATGSFAL VDSAQLNRRV SPDIFSRLEG ITSGLLFNKN
TVNSNSGNLD LSIRGRSTIF ANDQPLIILD NFPFNGDFNS INPNDLANIT VLKDAAAASI
WGVRAGNGVI VISTKRGKTG QALNISLNTN ITVAGKPDVF YNPNHLSSSD FIDIETFLFN
NGKYDAALTD QVNYPVVSPV VQILNKQRQG QSAAETEKQL NALRGNDIRN EELKYFYRKP
VSQQYFLNAS GGTARSSHYF SLGYDKTLSS LVNNDNDRIT INSQNTFRPI KNLEIEAGFN
YTRIASRVDS TIRETSDVNF TPYYQFRDAN GNPTVFDKNF SADYKQQALT KGFLDWSYVP
LTELGKSPFI SKNNDVRVNG ALKYTIIPGL SAALKYQYQL LDNKTERYNS LETYQSRNLI
NQYSVLTSDR VSGYHIPLGG ILYSANGKAV SNNFRAQLAY QRDLQNSAVS AILGYELSEF
SSDISDHFDY GYDQKTGTSI PVDSTSTFNL NPSGTGKINT GVAPFGKLDR IRSVFANLAY
SFNNKYVLSA SARIDGSNYF GVKTNQKNVP LWSAGALWNV DRETFYQLNW LPILKLRASY
GYNGNLDKSN TGITTFRYNG IGALYTGLPN AGILNIGNPE LRWEKIGIAN FGIDFGLKDQ
IVTGKLEYYF KNGTDILGDK AFASSTGIKT LRGNYSKMKA NGMDVSLISQ NLRGELKWTT
NFLFSFVHDK VTSYDVIEPR SAYYVGTYST KPVLGRPVYG IYSYKWAGLD PENGDPRGYL
NDEVSKNYST IVNTTSVNDL EYNGPARPTV FGGLNNIFSY RKFTLGFNIS YKLGYYFRKP
SINYTNLYTG NMGFFMNRDY ENRWQKTGDE LITNVPSMAS YATDSFRDIF YNNSSVTVAK
GDHIRLQDVS LSYDLDQTNW KRIPFKKVQL YCYASNLGMI WKANDFGLDP DVIPLIKERL
SNPLSKSFAF GLKANF
|
|---|
| |