| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1019 |
|---|
| Symbol | |
|---|
| ID | 8252113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1194404 |
|---|
| End bp | 1195327 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644934673 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003091302 |
|---|
| Protein GI | 255530930 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATACAATAGC CCTATGCCTG TTCAGTTCGG CGCTGTTTGC CCAAAATGCA
AAACAGCCGG GTTCGGCAGT TAAAACAAGC TTAAATGCCT ATTCATTTAA TAAGAATATG
ACTGTCAGCA AGTCGATGAC CCTTTTCCAG CTGCTGGATT ATGCTGCGGA ACAGAATTTT
GATGCCATCG ACATTACGGC TTATTTCTTC CCCGGATATC CAAACGTTCC CAGTGATGAG
GTAATCAATA ATGTGAAGAG GAAGGCTTTC CAGCTGGGCC TTGACATTAG TGGTACAGGT
GTAAAAAATG ACTTTGCCAA TCCAGATCCT GCAAAACGCG CAGCAGATGT AAAGCACGTT
AAGGAATGGA TAGATGTAGC TGTAAAGCTG GGTGCCCCGG TAATCAGGGT TTTTGCAGGC
CCTGTTCCAA GTGGTTACGA GGGTAAGTGG GATGAAGTGG CTAAATACAT GGCCCAAAGT
TTAAAGGAAT GTGCCGATTA CGGCCGGCAA AAAGGAGTGC TGGTTGGCGT ACAAAACCAT
GGCGATTTCT TAAAAACAGC CGATGAAGCG ATAAAGATCG TTAAGATGGT CAATTCTGAA
TGGTTTGGTG TAATTGTAGA TACCGGTTAT TTCATTACAA AAGATCCCTA TGCAGATATT
GAAAAGATAA TGCCTTATGC GGTCAATTTT CAGATTAAGG AAAGCCCTTT TGGCCCGCGC
AGTACCATAA AAACCGATTT GCCAAGGCTC ATGAAAATCA TCAATAAGAG TGGTTACAGG
GGATACCTGC CCATAGAGAC CTTAGAGATC AAAGGAGAAC CACGCCCGGT ACCGGACATT
CCGTACAACC CCTTCGTTTT GGTGCCTGCT TTTTTGAAGG ACTTAAAAGC AGCTATCCAT
TCTGAATATA AAAGAGAGCA TTAA
|
|---|
| Protein sequence | MKKYTIALCL FSSALFAQNA KQPGSAVKTS LNAYSFNKNM TVSKSMTLFQ LLDYAAEQNF
DAIDITAYFF PGYPNVPSDE VINNVKRKAF QLGLDISGTG VKNDFANPDP AKRAADVKHV
KEWIDVAVKL GAPVIRVFAG PVPSGYEGKW DEVAKYMAQS LKECADYGRQ KGVLVGVQNH
GDFLKTADEA IKIVKMVNSE WFGVIVDTGY FITKDPYADI EKIMPYAVNF QIKESPFGPR
STIKTDLPRL MKIINKSGYR GYLPIETLEI KGEPRPVPDI PYNPFVLVPA FLKDLKAAIH
SEYKREH
|
|---|
| |