| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0905 |
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| Symbol | |
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| ID | 8251999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1059997 |
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| End bp | 1063542 |
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| Gene Length | 3546 bp |
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| Protein Length | 1181 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644934560 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003091189 |
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| Protein GI | 255530817 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000345884 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGACTAA CCACCGTGAT ATTAATAGCA TCCCTTATGC AGGTCAGCGC AACAACGCTG
GCCCAGCGTA TCACTATAAA AGGCAATCCA ATAAGCCTGA AGGCTATTTT TACCGAGATT
AAAAAACAAA CAGGCTTTCA GGTACTGTAC CAATCTGCAC AATTGAATAA AGCTAAACCC
ATAAAGATAG CCTTAAACAA TGTCCCTCTT GAAGAGGCCA TGCCACAGAT TCTTGCTGAT
CAGCAGCTGG ATTTCGAAAT AGAGGATAAA ACCATAATTA TAAAAGAAAG ATCCCCTTCT
CTGCTTGATA AGCTTAGTAA CGTCATCTCG AACATGGTGA GGAATCTTAC CATAAAAGGC
CGGGTAGTTG ATCAGGACGG GAAGCCACTC CCAAACGCCA GTATCCGGGT AAAAGGGAAA
AGTGCTGTTA CGAATACTAA TTCGGAGGGC GAGTTTGAGA TCAAAGGTGT AGATGAAGAT
GCGGTTTTGC TTGTGAGTTA TGTGGGGTAT AAAACTTTGG AGATTGCGTT AAAGGATGCG
GTGATGCCAT TGGAGATTAA GCTGAATGCA GCGACTGGCG AACTAGAAGA GGTGAAAGTT
GTTTATAATA CCGGTTATCA GGAGCTGAAT AAAGAACGTG CGACGGGAAG TTTTGTTCAA
ATTGATAATA AATCAATCAA ACGTGGAGTG TCAACCAATA TTCTCGATAG AATCTCTTAC
CTGACAAGTA GTTTGAGAAA AGGAGGAAAT GGGGAAGCCA GTGTCAATGG GACAGATATC
AGTATAAGGG GATTGAGTAC GGTTAATGCA AATCAAAAAC CACTTATAGT CATTGATGGT
TTTCCTTATG AGGAGTATAT TTTTGGTTTT GGAGGACAAA TTATTTTAAA CAATTTAAAC
CCAAATGACG TAGAATCAGC AACAATACTT CGTGATGCTG CGGCAGCAAG CATTTGGGGT
GCTAGATCCG CAAATGGGGT AATCGTAATT ACAACCAAGA AAGGTAAGTT CGATCAGAAA
GCTAATGTGT CGTTTTTTAG CAATACAACA ATTGGAGAAA GGCCTGACTT GTTTAAAGCA
AATATTATGT CTTCTAATGA TATGATCGAC TATGAGAAAA AGCTTTTCAA GATTGGAGTA
TATAACGATT ACGATGATTT ATATCCTTCT TCTAACAGTT TTCCTTCATT GTCTTCAGGC
ATTGAGCTTC TTCTAGCAAA TCGTCGAGGT GAAATTAGTG ATTCACAGAC TATTATTAAT
CTTGAGAAAC TTAGAAATAA TGATGTGCGC AATGATGTAA ATAAATACTT GCTAAGATCG
TCTGTAAATC AGCAATACAA TTTAAACGTA AGCGGTGGTA GTAATAAGAT GAATTATTAC
GGTTCTATTG GTTATGATAA AGAACTAAAG TCAGCAATCG GGAATGAATA CAATAGATTA
ACATTAAGAT TAGACAACAA TTATCGTATT ACTAATAACA TAGAATTAAA TACATATGTA
TCTTATACTC AAAGCAAAAC TCAAAATAAT GGTATAAGTT ATGACCAATA CATTGCCAAT
GGGATTAACC AAGTTTCTCC CTATACTATG CTAGCCGATG AAAATGGAAA TCTACTATCG
GTTCCTAAAA GATTAAGATC CTCATATATC GATACTGTTA AAACTAGAGG TTTGGTGGAC
TGGCATTATA ATCCAATAGA GGAAATAAGT AACCAAGACA ATACAGATAA ATTATCCACC
ATAAGATTTG GGGGTGGCTT AATATATAAG ATCATTCAAG GATTAAATTT AAACCTCAAA
GGTCAATACG ATCATTCATT ATCAAATTCA GAGGATTATA AAAGTATTAG AAGCTATGAA
GTTAGAGATA ATATAAACAC CTATATGTTT CTCAATGCTC TGGGACAACC ACAATATCCA
ATTCCCCTTG GGGGCACTTT AAACTTCAGA AGTATGCGCC AAACATCGTA TAATTTGCAA
GGTCAGTTAA ACTTTAGCAA AACTTTTGAT GCACATGCTA TTTCAGCTAT TGGTGGTTTT
AATGTTAATG AGTCTCAAAG AGATTTGAAT TCAAATAAAA AATGGGGGTA TGACCCTTTG
ACTTTAGGCT TTGCCAACAA TATGGATTAC AACACAAGGT ATGCCATGAG AGCATCCTCA
GGCAATACCG GAACAATCCC CAAAGATAAT GGAAGTTTGA GTGGCTCCTT AAATCGAAGT
TTAAGTTACT ATAGTAACGT GGGATATACA TTGTTAAATA AATATACGTT AAATGCTAGC
GCCCGTATTG ATGCCGCAAA CCTTTTTGGT GTTAAAGCTA ATTTAAAAGC AAAACCGACA
TGGTCTTTCG GAACTGGTTG GAACATAAGT AAAGAAGATT TTTTTGATGT TGGTTCTATC
TCTTCTTTAT CATTAAGAGC GACTTACGGT TATAATGGAA ATGTAGATAA TAATGCAACT
TCTTTTCCCG TGATAAGGTA CCAGTTGGCC TCGTTGCCAT ATAGTATTCC TCAGCAATAT
GCAACTTCAG TCAGTCCTCC TAACCCAGGA TTAACATGGG AGAAGGTCAA AGTCATTAAT
TTAGGTTTGG ATATATCGAT GTTTGGTAAT CGTTTAATAG GATCTGTTGA TTATTATATT
AAAAAGGCAG GCGATTTAAT AAGTTCCCAA CCTGTTGATC CAACCGTTGG AGTAAACTCC
TATACTGGCA ATTTTGGGGC TTTAAAAGCG GAAGGTATAG ATTTAAACTT AACAGCACTT
GTTTTAAATT ACGGTATTAA AGTAAATTCT GCCATTTCAC TAAGTTATAA TAAGGAAGAA
ATAACTGATT ATTATTTAGC CCCCAGTTTA CTTATTCAGC CTTTAAATTA TTTAAGCAAC
CAGGTACTAG CTGGAAAACC TCGTAACTAT TTATATAGCT ATCGTTGGGC TGGATTGAAT
AGTCAAACTG GAGATCCAAT GGGTGTTGTC GATGGTCAGA TAGTTCCCTT CACAACCGTT
CTAGGGTCTA CCGGAGTTGC TCCCAATACA CATCCTACAG ATCTTATCTA TCATGGAAGA
AGTACAGCAC CTGTTTTTGG GAATATGCTA AATACTATCA GCTATAAAGG CTTTTCTACT
TCCTTTAATA TTACCTATGC TTTTGGATAT TACTTCAGAA GGCCATCGGT AAATTTTAGC
CTGATTCAAT ATACTTGGGG AGGACATGGA GATTATAAGA ACCGCTGGCA AAAACCAGGT
GACGAATTGT TCACAAATGT GCCTTCACTA CCTTTAATGT CAGACGGTAG AGATGAATTT
TATGCCTATT CGGAAGTATT AGTTGAGAAA GCAGATCATA TACGTTTACG CGATATTCGT
TTATCTTACG ATCTAAATAA AGGACAAGTA AGAAAATTTC CTTTTACTAA TATTTCCTTT
TATGTGTTAG CGAATGACTT AAACGTTCTC CTGTGGAGGG CCAATAACCA TAACATTGAT
CCTGAAAATC TTAACAAAGT TCCCAATCCA CGTTCGATAT CTGTTGGTTT GACATTAAAT
TATTAA
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| Protein sequence | MRLTTVILIA SLMQVSATTL AQRITIKGNP ISLKAIFTEI KKQTGFQVLY QSAQLNKAKP
IKIALNNVPL EEAMPQILAD QQLDFEIEDK TIIIKERSPS LLDKLSNVIS NMVRNLTIKG
RVVDQDGKPL PNASIRVKGK SAVTNTNSEG EFEIKGVDED AVLLVSYVGY KTLEIALKDA
VMPLEIKLNA ATGELEEVKV VYNTGYQELN KERATGSFVQ IDNKSIKRGV STNILDRISY
LTSSLRKGGN GEASVNGTDI SIRGLSTVNA NQKPLIVIDG FPYEEYIFGF GGQIILNNLN
PNDVESATIL RDAAAASIWG ARSANGVIVI TTKKGKFDQK ANVSFFSNTT IGERPDLFKA
NIMSSNDMID YEKKLFKIGV YNDYDDLYPS SNSFPSLSSG IELLLANRRG EISDSQTIIN
LEKLRNNDVR NDVNKYLLRS SVNQQYNLNV SGGSNKMNYY GSIGYDKELK SAIGNEYNRL
TLRLDNNYRI TNNIELNTYV SYTQSKTQNN GISYDQYIAN GINQVSPYTM LADENGNLLS
VPKRLRSSYI DTVKTRGLVD WHYNPIEEIS NQDNTDKLST IRFGGGLIYK IIQGLNLNLK
GQYDHSLSNS EDYKSIRSYE VRDNINTYMF LNALGQPQYP IPLGGTLNFR SMRQTSYNLQ
GQLNFSKTFD AHAISAIGGF NVNESQRDLN SNKKWGYDPL TLGFANNMDY NTRYAMRASS
GNTGTIPKDN GSLSGSLNRS LSYYSNVGYT LLNKYTLNAS ARIDAANLFG VKANLKAKPT
WSFGTGWNIS KEDFFDVGSI SSLSLRATYG YNGNVDNNAT SFPVIRYQLA SLPYSIPQQY
ATSVSPPNPG LTWEKVKVIN LGLDISMFGN RLIGSVDYYI KKAGDLISSQ PVDPTVGVNS
YTGNFGALKA EGIDLNLTAL VLNYGIKVNS AISLSYNKEE ITDYYLAPSL LIQPLNYLSN
QVLAGKPRNY LYSYRWAGLN SQTGDPMGVV DGQIVPFTTV LGSTGVAPNT HPTDLIYHGR
STAPVFGNML NTISYKGFST SFNITYAFGY YFRRPSVNFS LIQYTWGGHG DYKNRWQKPG
DELFTNVPSL PLMSDGRDEF YAYSEVLVEK ADHIRLRDIR LSYDLNKGQV RKFPFTNISF
YVLANDLNVL LWRANNHNID PENLNKVPNP RSISVGLTLN Y
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