| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0874 |
|---|
| Symbol | |
|---|
| ID | 8251968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1028722 |
|---|
| End bp | 1029567 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644934529 |
|---|
| Product | Transketolase domain protein |
|---|
| Protein accession | YP_003091158 |
|---|
| Protein GI | 255530786 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3959] Transketolase, N-terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.677625 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00151524 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATA CAATTAATGA ATTAGAAGAT ATCGCTGCTC AGGTAAGAAG GGATATCGTT
AGAATGGTAC ATGCCTGCCA ATCGGGACAC CCGGGAGGAT CTTTAGGATG TGCAGATTTT
ATGACTGCAT TGTATTTTGA AATCATGAAC CACTCTACTG ATTTTAAAAT GGATGGAAAA
GGCGAAGATT TGTTTTTTCT TTCAAACGGA CACATTTCAC CGGTTTTTTA CAGTGTCCTG
GCCAGATCAG GCTATTTTGA GGTAAGTGAA CTGGCTACTT TCAGAAAATT AAATTCAAGA
TTACAGGGGC ACCCTACTAC ACATGAAGGG CTTCCTGGTG TAAGGATAGC ATCTGGTTCT
TTGGGCCAGG GCATGTCGGT AGCTATTGGC GCAGCCCAGG CAAAAAAGCT GAACAAAGAT
CATTCAATTA TATATTCTTT ACACGGAGAC GGCGAATTAC AGGAAGGTCA GAACTGGGAA
GCCATTATGT ATGCTCCCTT TAACAAGATA GACAACCTGA TTTCGACAAT TGATTATAAC
GGACAACAAA TTGACGGCCC TACTGAAAAG GTATTGTCGC TGGAAAACCT GCAAGCTAAA
TTTGAAGCTT TCGGATGGCA TGTGATCAAC TCTGATGGTA ATGACATGGA TGCCATTGTT
AAAGCATTAC ATTATGCAAA ATCACTGACT GGTAAAGGTA AACCAATCCT GAACTTAATG
AGCACACAGA TGGGCTATGG CGTTGATTTC ATGATGGGAT CGCACAAATG GCATGGCGTT
GCCCCTAATG ATGAGCAGCT TGCCGCAGCT TTGGCGCAAT TAAGTAGTAC CCTAAAAGAT
TATTAA
|
|---|
| Protein sequence | MKHTINELED IAAQVRRDIV RMVHACQSGH PGGSLGCADF MTALYFEIMN HSTDFKMDGK
GEDLFFLSNG HISPVFYSVL ARSGYFEVSE LATFRKLNSR LQGHPTTHEG LPGVRIASGS
LGQGMSVAIG AAQAKKLNKD HSIIYSLHGD GELQEGQNWE AIMYAPFNKI DNLISTIDYN
GQQIDGPTEK VLSLENLQAK FEAFGWHVIN SDGNDMDAIV KALHYAKSLT GKGKPILNLM
STQMGYGVDF MMGSHKWHGV APNDEQLAAA LAQLSSTLKD Y
|
|---|
| |