| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0830 |
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| Symbol | |
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| ID | 8251919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 979240 |
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| End bp | 982041 |
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| Gene Length | 2802 bp |
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| Protein Length | 933 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644934480 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003091114 |
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| Protein GI | 255530742 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.926876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAATCAC AACTACACCT CAAAAAAGCA TTAATTACGG CTCTATTTGT AATTATCGGC
GCAACGGTAT TTGCGCAAAC TGGAAAAATT TCGGGTAAAG TATCGGATAA GAAAACCGGT
GAAACACTGA TTGGTGTTAC GGTTAAAATT AAGGGTACAA CAAAAGGGAT GGCTACCGAT
GTAGATGGAA AATATTCTAT AACCGGATTG GCAACAGGAA AATACATCCT GGTTTTTCAA
TATGTAGGTT ATACGGGCAA AGAGATTAGC GGGGTTGAAG TGGTGACAGG AAAGAATACC
ATATTTGATG TGATCCTAGA TGAAGCTGGA GGGCAGAAGC TGAATGAAGT TGTGATCCAG
GGGAGCTTTA AAAAGGAGAG CATCAATGCA TTGTATGCAC AACAAAAAAA CAGTGCGGTA
ATTTCTGATG GTGTTTCATC TGAGATTATT AAACGCTCAC CAGATAAGAA TACATCGGAT
GTTTTGAAAC GTGTAAGCGG AGCAACAATA CAAGACAATA AGTTTGTAGT GATCCGCGGT
TTAAGTGACA GATATAATAC TGCCACACTT GACGGTGCTT CATTGCCAAG TACAGAACCT
AATCGTAAAG CATTTTCTTT TGATATTGTC CCTTCAAACC TGGTAGAAAA TTTAATAGTG
AGTAAAACGG CTACACCCGA TCTTCCTGCC GATTTTACGG GTGGTGCAAT CCAGATCTCG
ACTAAAGATA TTCCAGATAA TAACTTCATC AGCATTGGTG TGGGTGCAGG TTATAATTCT
GCTTCTACTT TTAAAAATTT TAAAAGCGGA GTAAGAACAG CAACCGATTA TTTCGGCTTT
GACAATGGCG ATAAATCATT ACCTTCAAAT TTTCCGTCAC GTAATAGGAT TATAGGTGGA
GCATTAACAA CAGAACAGGG TATTGCCGCG ATGAACCGTC TTCCGTCTGA TTGGAAAACG
TACAATAATA CTGCTTTACC CACTCAAAAC TACCAATTTA CATTGGGTAG GGTTAAGGAT
TTTAAAGATA GCAACAATAA GTTTGGTGCG CTAATCTCGT TGACCTACAG AAATTCGCAG
ACAATCAGTA ATGATGTAAT ACGCGATTAT GTAAATGTTG ATTATCATGA TAATATTTAT
AAATTCTCAA CCAATATAGG TGCACTGGCA AATTTCGCTT ATACCTATGG TAAAAGTAAG
ATCACATTTA AAAATATCTA TAACAGAACT TTTGATGATC AATATTTGAG TAGAGCTGGG
TATAATAGTG ATAGAAACCG GGATATCAAG TTCTATGCAT TCGATTTAAT GCAAAAATCG
TTATTTAAAT CTACATTAGA AGGTACACAT GCATTGGGTG AAAATAATTC AAAAATCAAT
TGGTCCTTGA GTTATGCCAA CATTTTAAAC GATCAGCCAG ATCAGAAGAA GATTTCTTAC
CAAAGAAATC CGTCAGATAT CGGTACTGAT AACTATGCTT ATATAGCAAG TACAGGTACA
GTAAGTAAAG AAAATTCGAG GTTGTTCTCA AAATTAAATG AAAACAACTT TAGTGGTGGA
TTAAATTATA CGCTACCTGT AAAGATGTTT GGTCAGGGGG CAACATTTAA GACCGGCTTA
AATTCTATCT ATCGCGATCG TAAGTTTGAT GCAAGATTCA TAGGGTTTAG GGCAAACTCA
AGTTCGCCAG ATGCAGATGC GATAAGCAGA AGACCGTTAA GGAGTTTGTA TGCTAAAGAT
GCAATCAATA GCGGCGCCTA TTTTTTGGAT GATATTTCGG CGGATGCAGA TAGTTATACT
GCTCATTCAT TAACCAATGC AGGTTATTTA ATGTTGGATA ACAAATTCGG AGAAAAATCC
AGATTGGTAT GGGGTGTAAG GGTTGAACAA TTTAATGTAG TATTGGACGC TAAAGTTCCT
ACTCCACAAA CATCAGTTGA TGACAATTAT ATAGATGTTT TACCATCGGC AAATTATACT
TATAGCTTAA CAGATAAAAT CAACTTAAGG GCCTCTTATT ACCGTACCCT GGCAAGACCA
GAGTTTAGAG AGTTGGCTTC TACTTCTATT TACGATTATG AATTATTGGC CCTGCAACAA
GGTAATCCAA ATCTGAAGGA GGCAAAAATT GATAATGCTG ATATTCGTTT CGAATTCTAT
CCACAGGCAG GGCAAATCAT TTCGGTATCT GCTTTTTATA AAAAATTCAA CAATGCTATC
GAATCATTTA ACAGCGACGG CGGCTCATCA AGAATCATCA CTTATATTAA TTCAGATAAG
GTGAATGTAT ATGGAGTTGA ACTGGAATTC CGTAAATCCC TGGATTTTAT TGCCAAAACC
GATTTCTTGG AGAAAACTAT TTTTTATACC AACCTTTCCT TAATTAAATC GAAAGTTGAA
ACAAATAATA CGGGTATCAA CCTAAAAGAT ACAAGCAGAC CAATGGTTGG GCAAGCACCA
TATATTATCA ATGCTGGTTT ACAACATAGT TTTTTAAGCG ATAAACTGAA TTTTAACGCA
CTTTATAATA GAGTAGGCCG TAAGTTAAAT GTTGCTGGGG GTGTTTTGTT TCCTGCAATT
TGGGAAGCAC CTAGAAACGT GGTCGACTTA CAGGTGGCGT TGAAAGTAAT CAAAAACAAA
GGGGAAATTA AATTTAACGC AGGCGATATT CTGAATAACC GTATTACGCA ATATTACGAT
AACGATTCGG ATAAAAAATA CAACCGAGCT AAAGGTGATG AAACGATCAG CAGCTACAAG
CCAGGCAGCA ATTATTCTGT ATCCTTTAAT TACACATTCT AA
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| Protein sequence | MKSQLHLKKA LITALFVIIG ATVFAQTGKI SGKVSDKKTG ETLIGVTVKI KGTTKGMATD
VDGKYSITGL ATGKYILVFQ YVGYTGKEIS GVEVVTGKNT IFDVILDEAG GQKLNEVVIQ
GSFKKESINA LYAQQKNSAV ISDGVSSEII KRSPDKNTSD VLKRVSGATI QDNKFVVIRG
LSDRYNTATL DGASLPSTEP NRKAFSFDIV PSNLVENLIV SKTATPDLPA DFTGGAIQIS
TKDIPDNNFI SIGVGAGYNS ASTFKNFKSG VRTATDYFGF DNGDKSLPSN FPSRNRIIGG
ALTTEQGIAA MNRLPSDWKT YNNTALPTQN YQFTLGRVKD FKDSNNKFGA LISLTYRNSQ
TISNDVIRDY VNVDYHDNIY KFSTNIGALA NFAYTYGKSK ITFKNIYNRT FDDQYLSRAG
YNSDRNRDIK FYAFDLMQKS LFKSTLEGTH ALGENNSKIN WSLSYANILN DQPDQKKISY
QRNPSDIGTD NYAYIASTGT VSKENSRLFS KLNENNFSGG LNYTLPVKMF GQGATFKTGL
NSIYRDRKFD ARFIGFRANS SSPDADAISR RPLRSLYAKD AINSGAYFLD DISADADSYT
AHSLTNAGYL MLDNKFGEKS RLVWGVRVEQ FNVVLDAKVP TPQTSVDDNY IDVLPSANYT
YSLTDKINLR ASYYRTLARP EFRELASTSI YDYELLALQQ GNPNLKEAKI DNADIRFEFY
PQAGQIISVS AFYKKFNNAI ESFNSDGGSS RIITYINSDK VNVYGVELEF RKSLDFIAKT
DFLEKTIFYT NLSLIKSKVE TNNTGINLKD TSRPMVGQAP YIINAGLQHS FLSDKLNFNA
LYNRVGRKLN VAGGVLFPAI WEAPRNVVDL QVALKVIKNK GEIKFNAGDI LNNRITQYYD
NDSDKKYNRA KGDETISSYK PGSNYSVSFN YTF
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