Gene Phep_0209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0209 
Symbol 
ID8251294 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp244910 
End bp246463 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content44% 
IMG OID644933859 
Productprotease Do 
Protein accessionYP_003090497 
Protein GI255530125 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0976741 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGGA TAGGATTAAT AGCGTTGGCT GCATTTATAG GTGGTGCGGC TGCAATTGGT 
GGCTATAAAT TATTAGAGAC CAAAAATAGT GAGATGTTAT CTTTTGCCGA CCAGCAAAAG
GTGCTTTTTG CAAATAACCC CAAAATTTCT TCAGCAGGTG CTGTTGATTT TGTAGAAGCT
GCAGCATCAG TTTCTCCGGC GGTAGTTCAC ATTAAAACTT CGTACGGTAG TAATTCTTCC
GAAGGGCAGG CAAGGTCCTC TTCTCCTTTT GATATGTTTG ACGATCTGTT TGGTGGTGGC
GGTGGCCGCC GAATGCAGCG TATGCCAAGG GCAGCTTCTG GTTCGGGAGT TATTTTAACC
CCTGATGGTT ATATTGTAAC CAACAACCAC GTGGTAGACA ATGCAGATAA AATTGAAGTG
ATCTTGTCCA ACAAACGGAA AGTAAGTGCC AAAGTGATCG GTAAAGACCC GAATACGGAC
CTTGCCCTGA TTAAAGTTGA GGCCAATGAC CTGCCCGTAG TAAAAATGGG TAACTCTGAT
AATGTTCAGA TCGGTGAATG GGTACTTGCA GTAGGTTTCC CGCTTGATCT GCAAACTACG
GTTACTGCAG GTATTGTAAG TGCAAAAGCA AGAAGTATTG GCATTTTGGG CAGACAACAA
CAAGGCCTGA CAGAAGAAGA GTATGAAGAA TACCGCAGAA CCGGTAAAGC ACCGGAAAGG
GCAAATACCA GTATAGAATC TTATATCCAG ACCGATGCGG CCATTAATCC TGGAAACAGT
GGTGGTGCAT TGGTAAATAC CAACGGAGAG CTGATCGGGA TCAATGCAGC AATTGCTTCG
CAAACCGGTA CCAATGAAGG ATATGGCTTC GCTATTCCAA TTAACCTGGC TAAAAAGATC
CTTGATGATT TTAGAAAATA TGGTAGTGTG AAACGTGGTT ATATAGGTGT TTCCTTTGTT
CCACTTGATG CAGATAATGC TGACAAACTG AAAGTGAACG ATATCAATGG ACTTTATGTA
AGTGAAGTAC TGCCAAATGG TGGTGGTGCT GCTGCGGGGA TTAAAAAAGG AGATATCATT
AAAAAAGTTG AGGGCGTGGA AGTTTTTGAC TCTCCAGACC TTCAGGAAAG AATAGGCCGT
TTGAGTCCTG GCGATAAAGT TCAGTTGACC TTGTTAAGAG ACGGTGCCTT AAAAGATGTT
AAGGTTACTT TGAAAGGTGA TAACAGTGTA GGCCTGAATA CTTCAAAACT GGCTGAAAAA
TCAACCGGTA CAAGCCTGAG TAAGTTAGGG GCTTCTTTTG AACCTGCCTC TGCGCAACTT
AAAGCACGTT ATGGGGTGAA AAATGGAGTT GTAGTGAGCG ATATCGAAGC AGGTAAACTG
TTCGATTCAT GGGAGATCCC TAAAGGCGTA TTGATCACCG CTGTGAACGG TACACCGGTA
AACAGTGCTA AAGATGTGGA AAGCGCTCTG CCAAGATCAA GAAACGGTAT GACTACCATT
TCAGGGGTTG GCCCTCAGGG TAGGTTTACC TATTCACTGA CGAACGGAAG ATAA
 
Protein sequence
MKRIGLIALA AFIGGAAAIG GYKLLETKNS EMLSFADQQK VLFANNPKIS SAGAVDFVEA 
AASVSPAVVH IKTSYGSNSS EGQARSSSPF DMFDDLFGGG GGRRMQRMPR AASGSGVILT
PDGYIVTNNH VVDNADKIEV ILSNKRKVSA KVIGKDPNTD LALIKVEAND LPVVKMGNSD
NVQIGEWVLA VGFPLDLQTT VTAGIVSAKA RSIGILGRQQ QGLTEEEYEE YRRTGKAPER
ANTSIESYIQ TDAAINPGNS GGALVNTNGE LIGINAAIAS QTGTNEGYGF AIPINLAKKI
LDDFRKYGSV KRGYIGVSFV PLDADNADKL KVNDINGLYV SEVLPNGGGA AAGIKKGDII
KKVEGVEVFD SPDLQERIGR LSPGDKVQLT LLRDGALKDV KVTLKGDNSV GLNTSKLAEK
STGTSLSKLG ASFEPASAQL KARYGVKNGV VVSDIEAGKL FDSWEIPKGV LITAVNGTPV
NSAKDVESAL PRSRNGMTTI SGVGPQGRFT YSLTNGR