| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0182 |
|---|
| Symbol | |
|---|
| ID | 8251267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 211700 |
|---|
| End bp | 212398 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644933832 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003090470 |
|---|
| Protein GI | 255530098 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.509167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAG AGATAAAGGA TTTAAAAAAG GTTTACGACG GCACAACGGT TGTAAACATT
ACGCATTTGC AGATTGGACA GGGGGAAACA ATAGGACTGG TAGGGAACAA TGGTGCCGGC
AAAACCACAT TGTTCAGGAT GATATTGGAC CTGATCCGTC CGACTGCCGG ATCAGTCTTG
TCCAAAGGGG AAAACGTAAT GCAAAGCGAT GCCTGGAAAA ACTATACCGC TTCTTTTCTG
GACGAGGGCT TTTTGATCGA TTACCTGACA CCTGAGGAAT ACTTCGTGTT CATTGGAAGC
CTGCACAACC TGACTGCCGC ACATGTATAT GAGTACCTGC AGCGGTATGA AGAATTTTTT
AACGGAGAAA TCCTGAATAA GGGCAAGTAC ATCAGGGATT TTTCCAAAGG GAACCAAAAT
AAGGTGGGCA TTGCCGCTGC GCTGATGCAA AACCCCGAAT TGCTGGTTCT TGATGAACCT
TTTGCCAATC TGGACCCAAC CACTCAGATC AGGCTTAAAA CCCTGATCAA ATCACTCAAA
CAACAACATC AGATCAGCAC CCTGATTTCC AGCCATGACC TGAATCATGT GACCGATGTA
TGTGACAGGA TCATCCTTTT GGAAAAAGGT CTGGTCATTA AAGACTTCAA TAAGGATGAA
AACACCTTAA AAGCATTGGA AGCCTACTTC TCCGAATAA
|
|---|
| Protein sequence | MILEIKDLKK VYDGTTVVNI THLQIGQGET IGLVGNNGAG KTTLFRMILD LIRPTAGSVL
SKGENVMQSD AWKNYTASFL DEGFLIDYLT PEEYFVFIGS LHNLTAAHVY EYLQRYEEFF
NGEILNKGKY IRDFSKGNQN KVGIAAALMQ NPELLVLDEP FANLDPTTQI RLKTLIKSLK
QQHQISTLIS SHDLNHVTDV CDRIILLEKG LVIKDFNKDE NTLKALEAYF SE
|
|---|
| |