| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0157 |
|---|
| Symbol | |
|---|
| ID | 8251242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 185104 |
|---|
| End bp | 186015 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644933807 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_003090445 |
|---|
| Protein GI | 255530073 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAACCAT CGAACTTTAG GTATTTTTTT GCGGGTATTC TGTCTTTTGC AATCTGGGGC
TTTTTCTCTA TCCCTTTACG AAACCTGAAA GCTTTTCCTT CGGAAGAAAT TCTGTATTAC
CGTATTTTTA CCTCAGTCAT TTTCATTTGG CTGGCCATTT TTATCTTCAG AAAAAAACAG
CTAAGGACTG ATCTGGTCTA TTTCAAATCT CTTAAATTAA AAGGAAAACG AAATGTTTTA
TTGCAGCTTG TTGTTTCCAC TTTATTACTG ACGGGGAATT GGTATACTTA TATTTATGCA
GTAAATAATG TCAGCCTGCA ATCGGCTGCC TTTGCTTATA TGGTTTGTCC GCTCATTACG
GCCTTCGGCG GATTTATCAT TTTAAAAGAA AAACTTTCAG GCTTAAAACT CATCTCGCTG
GGAATTGCCT TACTAAGTAT CCTGCTGCTG GCAACAGGTT CTTTGGTAGA GGTATCGTGG
TCTGTAATCA TTGCCTCGCT ATATGCATTT TATCTGATTA TACAACGTAA AATGCAGTAC
CTGGATAAAC TAAATGTGCT TGCAGTTCAG ATAGGCCTGG CTGTTTTGCT GATGCTGCCT
TTGTATCTTG CCCGGCATGC CGGATTTCCG CAATCGTTGT GGTTTTGGGA AAATATTACG
GTAATAGCTG TTTTCTTCAC CATTATTCCG TTGTTCATGA GCCTTTATGC TTTAATTGGA
ATCCCCTCGT CAACACTGGG TATTATCATT TATATCAATC CAATTATCGC CTTTGCAATA
GCTATTTTTT ATTTTGGGGA GCAGGTTAAT GCACATCGGC TGTTTGGTTA TACATTGCTC
CTGGCATCAG TATTGGTATT TAATTGGGTC ATCATAAAAG ATATTCTTAC ATTTAAGATA
AAAAAAACAT AG
|
|---|
| Protein sequence | MQPSNFRYFF AGILSFAIWG FFSIPLRNLK AFPSEEILYY RIFTSVIFIW LAIFIFRKKQ
LRTDLVYFKS LKLKGKRNVL LQLVVSTLLL TGNWYTYIYA VNNVSLQSAA FAYMVCPLIT
AFGGFIILKE KLSGLKLISL GIALLSILLL ATGSLVEVSW SVIIASLYAF YLIIQRKMQY
LDKLNVLAVQ IGLAVLLMLP LYLARHAGFP QSLWFWENIT VIAVFFTIIP LFMSLYALIG
IPSSTLGIII YINPIIAFAI AIFYFGEQVN AHRLFGYTLL LASVLVFNWV IIKDILTFKI
KKT
|
|---|
| |