| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0058 |
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| Symbol | |
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| ID | 8251142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 61672 |
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| End bp | 65229 |
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| Gene Length | 3558 bp |
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| Protein Length | 1185 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644933707 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003090346 |
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| Protein GI | 255529974 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAA CCATTACCTG CCTTATTAAA GCATTTTGCC TTGTACTGTC CGTCCTCTAT
TTGAACCAGG CGCATGCTCA GGTGAATAAA GCAATGCCTG TTGCAGAGGC CTTAAAAAAG
ATCACAGAGA AATACCAGAC CAAATTTGTT TACGAACCGG CTGTGCTGCG TGGCAAAACG
ACCACGGCCG CATTGGAAAA AACAAATGGA CAGTCTATAG AAGAGGTATT AAAAGGCATT
CTATATCCCA ACAACCTGTT GTTTCTTTAC GTAAGCGACA ACCACTATGC CATCATCAAT
AAAGATGAGA AATCATTCCA AAACGCAGCC GGAATAACAC TTGGTACTGC TGTACGTGGT
ATAATAAAAG GAAATGTTAC TGATGAAAAC GGATTGCCTT TACCAGGGGT CAACATTACG
GTAAAGGATA AAACAAGCCG GGCCAGTTCA GACAATTCGG GGAATTATGT AATTGCGGCC
GACAGGGAAG ATCTGCTGCT GTTTACTTTC GTTGGCTATC AGGTAGCAGA ACTTTCGCCC
AATTCAGGGG GCATTTTAAA TGTAAACATG AAACCTGACG TTTCGCAGCT AAAAGACGTG
GAGGTGGTAT CGACAGGTTA CCAGCGCATC TCCCGGGAGC GGAGTGCCGG GTCTTTTGCC
AAACCAGACC TGGATATCAT GAACAGCCGT TCATCAAGTA TGAACATTGC CCAGCGTTTA
GACGGACTGG TACCCGGACT TACAGTTAAC AATGCCCCCG GCACCGAGAC CTTACTGATC
AGGGGCCTTA CCTCTATCAA TGCTACAGCT TCGCCGCTTT TTGTAGTAGA CGGGATTGTG
CTGGACGGCG CCAATGTAAA CTCCATTAAC CCAAATGACG TGGCCGACAT TACTGTACTA
AAAGATGCCA CTGCGGCCTC TATATGGGGC TCTAACGCCG CCAATGGTGT AATTGTCATT
ACCACCAAAA AAGGGAGCAA TACCGGCAGG ATCAGGATAG ACTACGACGG TTTTGTGAAT
TTTCAGGGCA GGCCTGAAAC CGATTACCTG CCGGCCTTGA ACAGCAGTCA GTTTATACAG
GCTGCGCGAG ACATTTTTGA TCCTGTACTG AACACTTACG CTTCGGTTAC AAAGTTTAGT
CCTACTACCT GGAAACCTGT TCCTGCGCAT GAAGAACTCT TATATAAACT TGCAGATAAA
ACGCTTAGCC CGCAGCAGGT AGCCGCTTAT GAACAGCAAT TGACCGATCT GGCAAATACC
AGCAATCAGA AACAGATCAA CGAGCTGTTG TACCGCAACG CTTTACTCAC CAACCACACG
CTTTCTTTAA GCGGAGGAAC GGAGAAGTAT AACTTTTACG GCTCGGCAGC TTATACCGGA
ACACTCAATA GCAGTCCGGG GGCCAGCAAT AATACTTATA AAATCAATTT ACGGCAGGAC
TTTAAGTTCT CGGACAGGAT CCAGTTGTAC CTCATCACCG ACCTGACCAA TACTACGGCA
CAGGCAAAAC GCAATATCCG CCCAAACAAT ATGTTCCTTC CTTATGCATT GTTCCAGGAC
CAGAACGGCA GCAACATTTC TATGCCCTGG CTATATCTGC CAGATGCAGA CAGGGCAACT
TTCGAAAGCA AAAGTCTGAT TGACCTGAAT TACAGCCCGC TGGATGAAAT AAACCGCGGG
TACAACAACT CCAACAGCAT GCTGGCGCGG ATAAACACCG GTTTAGATGT AAACCTGATT
AAGGGCCTGA AGTTCCAGGG CGTGTATGGC CTGGTCAAAG GCAATACCAA AACCAGGAGC
TATGATGGCG ACGACAGCTT TACCTTCAGA CGTGAGCTGG CTCAGTTTAC TGTAGCGGCT
GTTGCCCCGG CAACCAAACC TACTTATTAC CTGCCCGAAA CAGGGGCCAT TTATGAAGTG
ACCAACAACC TGCAGGAAAA CTGGAATGTT AGGAACCAAT TGGTCTTTGA CCATTCTTTT
GATAACCAGA AACACCAGAT CACTGCTTTA TTTGGGCAGG AAATCCGCAA AACATTCAAC
ACCGGCAATG GCAGCATTGT AAGGGGTTAT GACGAACAAT TACTGACTTC AGGCCAGGTG
GATTATAAAA TGCTTGCCGT AACAGGTGTT ACCGGAGTTT TACCAAGAGG GTCTGGTGCC
AATAAACTGG ACATCAGGAA TTTTTCGGCC AATGAAGCTG ATGTCCGTTT CCTTTCTTAC
TATGCCAACC TTGGCTATAC CTTTAACAAC AGGTATACTT TAAATGGCAG CTGGCGCATT
GATGAATCTA ACCTCTTCGG GAAGGACCAA TCGGCCCAGA ACAGGCCGGT ATGGAGTGTA
GGCGCGGGCT GGCTGTTGAG CAACGAAGGC TTTATGGATC AGGTTAAATG GGTAGACCGC
CTTAACCTGC GTAGTACTTA CGGCATTACC GGTAATGCCC CTATACCAGG TAGTGCGGCT
TCTTATGATA TTTTTGCCGC ACAGGCCAAT GCCATTTTCC CCGGGGGTAA AGGGCTGGTC
CTGTCTACCC CTGGCAATCA GAGCTTATCC TGGGAATCGA CAAAAACACT CAATTTTGGG
CTCGACTTTT CCATACTTAA ACGCCTGAAC GGCTCTGTTG ATGTTTACAG CAAAAAAACA
GAGAACCTGA TCGGCGAACT GCAGGTGAAC CCTTTTACCG GTTTTGCTAC CATAGAAGGA
AATCAGGGCG CCCTAAAAAA CAGGGGGGTT GAACTGAACC TCAGTTCTTT AAACATCAAT
ACCAGGGATT TTAGCTGGAG AACCTTACTG ACCCTGGGCT ATAACAAAAA TGAAGTGACC
GACCTTTACA GTAAAACCGC CATTACTACC GGCAGCGGGA AAGTAGAACA ACGTTTTATT
AAGGGATATT CTGCTTATGC CGTATTCGCT TATCAATACG CGGGGCTCGA CAATACCGGT
GCGCCGCAGG TAAGGTTAAA TGATGGTACC GTAAGTACAG CCAAAAATGT GGCCACACCA
GACGATATCG TTTATATGGG CAGCTTTCAG CCTAAATGGG CCGGGGGTTT TAGCAACAGT
TTAAAGTACA GGGATTTCGG ACTGCAGTTC AATGCCGTTT ATAACCTTGG TTTTGTGATG
CGCAGAGATG TCAACCGCTT TTATTCAGGC GGGAGGCTGG TGCCTGATGT AGGCTCATTC
ACTACCGGAA ATGTTCATTC TGATTTCGCA AACCGCTGGA AAGCTTCAGG TGATGAGGCC
TTTACAGATA TCCCGGCCTA TGTGGGTTCA AAAACCGACA CCCGCGAGCT GAACTACTAC
TACCTGGCAG ATAAAAATGT AGTTGATGCC TCGTATATCA AACTGAGGGA CATTACTTTA
GCTTATCAAT TGCCAAAGGC CCTGCTGAAC AGCATCAGGG CAGAAAGCAT CAGTTTCCGT
TTCCAGGTTT CCAACATCCT ATTGTGGAAA GCCAATGATT ATGGCATAGA CCCTGAATTT
CAAAGTGCGG CATCGGGTAC CAGGAACATG CCCGCCAACC AAAAAACCTT TACCCTGGGC
GCTCACGTAA CTTTTTAA
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| Protein sequence | MKKTITCLIK AFCLVLSVLY LNQAHAQVNK AMPVAEALKK ITEKYQTKFV YEPAVLRGKT
TTAALEKTNG QSIEEVLKGI LYPNNLLFLY VSDNHYAIIN KDEKSFQNAA GITLGTAVRG
IIKGNVTDEN GLPLPGVNIT VKDKTSRASS DNSGNYVIAA DREDLLLFTF VGYQVAELSP
NSGGILNVNM KPDVSQLKDV EVVSTGYQRI SRERSAGSFA KPDLDIMNSR SSSMNIAQRL
DGLVPGLTVN NAPGTETLLI RGLTSINATA SPLFVVDGIV LDGANVNSIN PNDVADITVL
KDATAASIWG SNAANGVIVI TTKKGSNTGR IRIDYDGFVN FQGRPETDYL PALNSSQFIQ
AARDIFDPVL NTYASVTKFS PTTWKPVPAH EELLYKLADK TLSPQQVAAY EQQLTDLANT
SNQKQINELL YRNALLTNHT LSLSGGTEKY NFYGSAAYTG TLNSSPGASN NTYKINLRQD
FKFSDRIQLY LITDLTNTTA QAKRNIRPNN MFLPYALFQD QNGSNISMPW LYLPDADRAT
FESKSLIDLN YSPLDEINRG YNNSNSMLAR INTGLDVNLI KGLKFQGVYG LVKGNTKTRS
YDGDDSFTFR RELAQFTVAA VAPATKPTYY LPETGAIYEV TNNLQENWNV RNQLVFDHSF
DNQKHQITAL FGQEIRKTFN TGNGSIVRGY DEQLLTSGQV DYKMLAVTGV TGVLPRGSGA
NKLDIRNFSA NEADVRFLSY YANLGYTFNN RYTLNGSWRI DESNLFGKDQ SAQNRPVWSV
GAGWLLSNEG FMDQVKWVDR LNLRSTYGIT GNAPIPGSAA SYDIFAAQAN AIFPGGKGLV
LSTPGNQSLS WESTKTLNFG LDFSILKRLN GSVDVYSKKT ENLIGELQVN PFTGFATIEG
NQGALKNRGV ELNLSSLNIN TRDFSWRTLL TLGYNKNEVT DLYSKTAITT GSGKVEQRFI
KGYSAYAVFA YQYAGLDNTG APQVRLNDGT VSTAKNVATP DDIVYMGSFQ PKWAGGFSNS
LKYRDFGLQF NAVYNLGFVM RRDVNRFYSG GRLVPDVGSF TTGNVHSDFA NRWKASGDEA
FTDIPAYVGS KTDTRELNYY YLADKNVVDA SYIKLRDITL AYQLPKALLN SIRAESISFR
FQVSNILLWK ANDYGIDPEF QSAASGTRNM PANQKTFTLG AHVTF
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