| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0036 |
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| Symbol | |
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| ID | 8251120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 39442 |
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| End bp | 39969 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644933685 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_003090324 |
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| Protein GI | 255529952 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.181086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.177131 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACACAGG AAGAAACATT TTATATAGGG TATATTACCA AAACAAAGGG GCTAAAAGGA
GAGGTTCAGT TATTTTTTGA ATATGATGAG CCAGGCTTGC TTGATCTGGA TGTGGTTTTT
GCAGCTATCA ATGGCAAAAT GGTTCCTTTT TTTGTCTCTT CTTATAAACT ACAGAACAAC
AATACGGGGA ATTTCTATTT TGACGACATT GATCATATAG ACAAGGCACA GCCCCTGGTG
AAAAAAAAGA TATACCTGCC CCTGACTAAA ATGCCGGACC GTTCGGACGA GGACTTTCAT
TATAATGACC TTAAAGGCTT TATGGTCTCA GATGAAAACA AGGGCGAACT GGGTGAGATT
ATTGAAGTAA ACGAATACCC CCAGCAATTT GTGGCAACGG TTTTATATAA AGGAACAGAG
ATCATGTTTC CTTTAAATGA GGACATGATT GTTGAAATAG ATGAGGAGGA GGAAACATTA
CTGGTAGATT TACCGGAGGG CCTGCTTGAT ATTTATCTGT CAAATTAA
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| Protein sequence | MTQEETFYIG YITKTKGLKG EVQLFFEYDE PGLLDLDVVF AAINGKMVPF FVSSYKLQNN
NTGNFYFDDI DHIDKAQPLV KKKIYLPLTK MPDRSDEDFH YNDLKGFMVS DENKGELGEI
IEVNEYPQQF VATVLYKGTE IMFPLNEDMI VEIDEEEETL LVDLPEGLLD IYLSN
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