| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5672 |
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| Symbol | |
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| ID | 8229288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 6812418 |
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| End bp | 6815471 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644933519 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003090027 |
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| Protein GI | 255039406 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00146027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.794297 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGTG CGGTGATGAC GGGTTTTACA GGGCAGGTCT ATGCAATGAG GCCTTCAAAT
CCGGCCATCA GGGTGATCGA CAGAACGGTG TCGGGCAAGG TGACTTCCGT AGAGGATAAC
ATCGGTATCC CGGGCGTTTC GGTTGTGTTG AAGGGAAGCA AAACAGGTAC CAACACCGAT
GCCGACGGCA ATTTCAAAAT CAATGTGCCC GAGGACAATG CGGTGCTGGT GTTTTCAGCG
GTAGGTTTTA CAACGCAGGA AGTTGCCGTT GGTAATAAAA GTACAGTCGA CATTGTGCTC
GCGAGCGACC AGAAAATATT GACGGAAGTT GTGGTAGTGG GGTATGGTAC CCAAAAGAAA
AGTCAGCTTA CCGGTGCTAT TTCGTCGGTA GGTGCGAAGG AAATCAATGA AATGCCTATT
ACCAACCTCG GACAGGCCTT GCAGGGCCGC GCAGCAGGGG TGGACGTAAC GCAGTCGGGT
TCCAAGCCCG GTACCGTGCC GAGAATCCTC ATCCGCGGCC GCCGTTCGTT CAATGCAGGT
AACGATCCTT TATATGTAGT AGACGGTATC CCCCTGGCGG GCGGGTATGA AGATATGAAC
CCCAGCGATA TCCAGTCGAT GGAGGTACTG AAAGATGCGA CGGCAACCGC CATTTACGGT
TCCCGCGGGG CGAACGGCGT TGTGATCGTG ACCACCAAGC GCGGCGGCCA GAAAGGCAAA
ACGACCGTGA GCTACGATGG TTACGTGGGT GTTTCCAAAG CATTGGATAA AGTAGACCTG
TTTAATGGGC CCGAGTTCGC GGAATTCGTT CGCGAAGCCT ACCGCGCCAC TGGCGGTTAT
AAGGATGCAG CCGGCAATGC AATTCCTACG GGCGTGATCA ATGCGGAAGC GGATGCGAAA
GTAGCGGTAC TCGGCGGCGA CCCCAATGTG GCCAAAGGTA TCGCCAACGG CACCAGCACC
GACTGGCAGG ACCTCGTGGT GGGCACCGGC ATGATGCAAA ACCACTCGAT CGGCGTTCAG
GGTGGAAGCG ATCGTACGCA ATTCTACATT TCGGGCGGCT ATTTCCGGGA CAAAGGGGTT
ATTAAAGAAG CGAACTTTAC TCGTTTCTCT CTTCGCGCGA ACATTGACCA TAATGTGAAC
AAATGGTTGA AAGTGGGTCT CTCGTCCTAC ATGATGAACA GCATCCGCAA CGGTGAAAAC
CTGAATACCT ACGGCATGAC CATTAACCAG AACCCGCTAG CGGTGCCTTA TGACGAAAAT
GGTAAACTGA TTTTCTCACC TACCAACGAC GCCTTGCTCA CCAACCCGCT CGCGGAGCTT
GTGAAAGGAG CGCAGGTGGA TCAGATGAAA CGTTACCGCA TTTTCAACAG CCTTTACACC
GAATTCAACA TTCTGCCGGG TTTGAAATAC CGCGTGAATT TCGGTCCTGA CTTCGTTATC
AGCCGCTATG GACGCTTCAT CGGCTCCATG ACCAACGCCA GAAAAGGAGG GGACGCGCAA
GCGAATACCG GTAATGCGAT TCAGTTCAAC TGGACTTTGG AGAACATTGT GAACTATACC
AAAACATTCG GTGGAAAGCA CAACCTGAAC ATTACTGCCC TGCACTCCAT CCAGCGTGAC
CGCGCGGAGG TGTATTCTTC TTCGGTGCAA GGGGTGCCTG TCGAATCACA GTCCTTTTAT
AACATCGGGG CTGCTACCAC CGTATTTTCT CCCGGAAGCG GTCTGGTTGA ATGGACGATC
AACTCGTTCA TGGGTCGTTT GAATTACGAT TACAATGATA AATACCTGCT CACGCTGACT
ATTCGCCGTG ACGGTTCGAG CCGGTTCGGT GAAAACAGCA AGTACGGTAA CTTCCCAGGT
GTGGCGGTAG GGTGGAATAT CGGTAATGAG GATTTCCTCA AAGGCGTAAC CTGGGTGGAC
CTGCTGAAAG TGCGTGCTGG CTGGGGTAAA GTGGGTAACA CCGGTTTGGC GCCGTACCAG
ACGCAAGCAT TCCTCGGCCG CACCAGCTAT GCATGGAACA CGACACCGGC TTACGGATAC
CGCCCCGGAA CAATCGGAAA TGCGGATTTG CGGTGGGAAT CTTCGGCTAC TGCTAACGTA
GGTCTCGATT TCAGTCTCGT TCGCGGACGT GTTCAGGGTT CATTGGAATT CTATCAAACC
AATACCACTG CATTACTTTT GTCTGACCAG CTGCCTGGCT CCATCGGTTT CAATGCCGTT
ACCCGCAACG TGGGCGAAAC GCGTAACCGC GGTATCGAGC TCGGTGTGAC CACGACCAAC
GTTAATACCA ACAGTGGTTT CAAATGGACA ACCGACTTTA CATTTACTAA AAACACCGAG
GCGATCCTTT CACTTTACAA TGGAAAAGTG GATGACCTGG GCAACGGCTG GTTCATCGGT
CGTCCGCTGA GCACCGTGTA CGACTACCGC AAAATCGGGA TCTGGCAAAC CAACGAAGCC
GATGCAGCGA AAGCCGTGAA CAGCGAAGTG GGACAAATCA AACTGAAAGA CATCGACGGC
GACGGCAAGA TCAATGCGAA CGACCGCGAG ATCATCGGTT CCGATGTGCC TGATTTCAGT
GGCGGTATTA CCAACCGTTT CTCTTTCAAA GGCTTCGACC TCTCGTTCTT CTTCTTTGCA
CGTGTAGGTA ACCTGATCCG CAGCGAGTTC CACCGTAACA ATAATGCATT GGCAGGCCGC
TATCAGCAAA TGAAAGTAGA TTACTGGACG CCGAATAACC CAACCAACGA GTTCCCTCGT
CCGAAAAGTA ACCAGGAGTT TCCGGTTTAC GGCAGCACGC TTACTTACTT CGACGGAACA
TTCGTGAAGC TGAGAAACGT GAACGTAGGT TATACCTTTA CGCCTGAATT GTCGAAAAAA
CTGGGAATGG AATCACTGCG CTTGTATTCG AGCATCCAGC AGCCGTTTAT CTGGGCCAAA
TACCGCAACA AATACAACGG TGTTGACCCT GAAACAACCG GCCTCGCAGC AGGCGGTACC
GGCATAACCC CCGCCACGAT GGTGATCACA TTCGGCTTGA ACGCGAAATT CTAA
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| Protein sequence | MAGAVMTGFT GQVYAMRPSN PAIRVIDRTV SGKVTSVEDN IGIPGVSVVL KGSKTGTNTD
ADGNFKINVP EDNAVLVFSA VGFTTQEVAV GNKSTVDIVL ASDQKILTEV VVVGYGTQKK
SQLTGAISSV GAKEINEMPI TNLGQALQGR AAGVDVTQSG SKPGTVPRIL IRGRRSFNAG
NDPLYVVDGI PLAGGYEDMN PSDIQSMEVL KDATATAIYG SRGANGVVIV TTKRGGQKGK
TTVSYDGYVG VSKALDKVDL FNGPEFAEFV REAYRATGGY KDAAGNAIPT GVINAEADAK
VAVLGGDPNV AKGIANGTST DWQDLVVGTG MMQNHSIGVQ GGSDRTQFYI SGGYFRDKGV
IKEANFTRFS LRANIDHNVN KWLKVGLSSY MMNSIRNGEN LNTYGMTINQ NPLAVPYDEN
GKLIFSPTND ALLTNPLAEL VKGAQVDQMK RYRIFNSLYT EFNILPGLKY RVNFGPDFVI
SRYGRFIGSM TNARKGGDAQ ANTGNAIQFN WTLENIVNYT KTFGGKHNLN ITALHSIQRD
RAEVYSSSVQ GVPVESQSFY NIGAATTVFS PGSGLVEWTI NSFMGRLNYD YNDKYLLTLT
IRRDGSSRFG ENSKYGNFPG VAVGWNIGNE DFLKGVTWVD LLKVRAGWGK VGNTGLAPYQ
TQAFLGRTSY AWNTTPAYGY RPGTIGNADL RWESSATANV GLDFSLVRGR VQGSLEFYQT
NTTALLLSDQ LPGSIGFNAV TRNVGETRNR GIELGVTTTN VNTNSGFKWT TDFTFTKNTE
AILSLYNGKV DDLGNGWFIG RPLSTVYDYR KIGIWQTNEA DAAKAVNSEV GQIKLKDIDG
DGKINANDRE IIGSDVPDFS GGITNRFSFK GFDLSFFFFA RVGNLIRSEF HRNNNALAGR
YQQMKVDYWT PNNPTNEFPR PKSNQEFPVY GSTLTYFDGT FVKLRNVNVG YTFTPELSKK
LGMESLRLYS SIQQPFIWAK YRNKYNGVDP ETTGLAAGGT GITPATMVIT FGLNAKF
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