| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5112 |
|---|
| Symbol | |
|---|
| ID | 8228719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6176428 |
|---|
| End bp | 6177318 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644932960 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_003089477 |
|---|
| Protein GI | 255038856 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.129853 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGG ACCAACGTTT CAAAGGGGTA GGAGCGGCGC TGATCACACC TTTTGATGAA
CAAAATGAGA TTGATTATCC GGGTCTGAAA AGACTGATCG ACCTGGTCAC GGAAGGTGGT
ACCGACTACC TCGTTGTACA AGGAACAACT GGCGAGTCGC CAACGGTTAC TTCCAAGGAA
AAGCGTGAGA TCCTGGCATT TACAATCGAA AATAACTACA AAAAGCTGCC GATCGTTTAC
GGTATCGGAA GCAACAATAC CCAGTCGGTA CTGAATACAA TTAAGGAAAC CGATTTTACC
GGCGTGGATG CGATCCTGTC TGTTTGTCCT TATTATAACA AACCCACGCA GGAAGGCATT
ATCGCGCATT TTACGGCAAT TGCCGATGCT TCGCCGGTTC CGGTACTTTT ATACAACGTT
CCGGGCCGCA CGGTAATCAA TATGAAGGCG GATACGATCG TGAAACTGGC GGCTCATCCG
AATATTATCG GTATCAAAGA CGCCGGCGGA AGCCTCGAAC AAAGCATGGA ACTCGCTGCC
CGTGCGCCGG AGGACTTTTT GCTGCTTTCG GGTGATGATA ACCTCGTGAC CACCATGGTG
AGCGTAGGCT GGCATGGCGT TATTTCGGTG ATTGCCAATG CATTCCCGAA AGAATTCGGC
GAACTCACCT GGGCTGCACT CGAAGGCCGT TTTAAAGACG CTGCCAAATT GCAGCTCGCA
TTTCTGGAAT TCGATACCTT GCTTTACATT GAATCTAACC CCGTTGGGAT CAAGAAGTGT
CTGGAAATCA AAGGCATTTG CAGCTCCGAT GTACGTTTGC CGTTGCTGAA AGCGTCGAAA
GAACTGGGCG AGAAGTTGGA GAAGGCGATG GTTCGCGAAG GGTTTATCTG A
|
|---|
| Protein sequence | MPLDQRFKGV GAALITPFDE QNEIDYPGLK RLIDLVTEGG TDYLVVQGTT GESPTVTSKE
KREILAFTIE NNYKKLPIVY GIGSNNTQSV LNTIKETDFT GVDAILSVCP YYNKPTQEGI
IAHFTAIADA SPVPVLLYNV PGRTVINMKA DTIVKLAAHP NIIGIKDAGG SLEQSMELAA
RAPEDFLLLS GDDNLVTTMV SVGWHGVISV IANAFPKEFG ELTWAALEGR FKDAAKLQLA
FLEFDTLLYI ESNPVGIKKC LEIKGICSSD VRLPLLKASK ELGEKLEKAM VREGFI
|
|---|
| |