| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5111 |
|---|
| Symbol | |
|---|
| ID | 8228718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6174275 |
|---|
| End bp | 6176362 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644932959 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_003089476 |
|---|
| Protein GI | 255038855 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.246917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.382765 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCCG AACAGAGAAT CCAGGAGCTT TCAGAAAAGC TGCATTACTA CAATGACCGC
TACTACCAGG ATAGCGTGTC GGAAATATCG GATTACGAAT TCGATCAGCT GCTCAAAGAG
CTGCAAGCCC TGGAAAGCGA ATACCCGCAG TTCCGGCAGG ACGATTCACC CACGCAGCGC
GTCGGCGGGA CGGTCACAAA GTCATTTAAT GCCGTGTACC ACCGGTACCC GATGCTCTCG
CTCGATAATA CCTATAATGA AGACGAACTC CGCAGTTTCG ACGACCGCGT GCGCCGCGGG
CTGGATGGAG AGGCTTACGA ATACATTTGC GAGCTCAAAT TCGACGGTAT TTCCCTCAGT
TTTACCTACG AAAACGGCGT CCTTGTGCGC GGCGTCACGC GCGGCGACGG CACACGCGGC
GACGAGATCA CCAACAATGT AAAGACTATT CGCTCATTGC CACTCCGCGT GAAAGCGGAC
GGCATTCCGC CTGTTTTCGA GATCCGGGGC GAGGGTTTTA TGCCCATTTC GTCATTTCAG
AAACTGAACG AGGAAATGGA AACGCTGGGT GAAAACCAGT ATGCCAATCC GCGCAATGCC
GCGTCGGGTT CGTTCAAGTT GCAGGATTCG GCGGAGGCGG CGCGGCGCGG GCTGGATAGT
TACATTTATT CGTTTTTATC GGATAATGCA TTTTTCAAAA GCCATGAGGA AAGTTTGCTG
GCGCTGAAAT CGTGGGGTTT TAACGTGTCG CCGGGCTGGA AGAAAGTTTC TACGATCGAC
GAGGTGATTG CATACATTCA TGAATGGGAG GAGAAACGGG CGCATTTGCC GCTCGCTACG
GACGGTATTG TGATTAAGAT CAATTCGTTC GAACAGCAGC GGGAGCTTGG ATTTACAGCC
AAAAGCCCGC GCTGGGCGAT TTCTTACAAA TACAAAGCGG AGAACAAACC CGCCGTGCTG
CGGATGGTGA CCTACCAGGT GGGGCGGACG GGCGCGGTGA CGCCGGTAGC CAATCTTTGC
GACCTTTCGG AGCGGGCATT GCCTTATAAT CAGGTTAAAG GCGTGCATTT GTCGGGCACG
CGGGTGAAAC GTGCTACCCT GCACAATGCC AACGAGCTGG AAAGGCTGGG CGTGCGGCTC
AACGACACGG TGTTTGTTGA AAAAAGCGGC GAAATCATCC CTAAAATCAC AGGAGTGGAC
GTTTCGCAAC GAGAAAACTA CGAAACCGAA CCGGTAATAT TCCCCACGCA TTGCCCCGAA
TGCGGCCACG AATTGCAGCG TAACGAAGGT GAAGTCGCGT TCTTTTGTCC CAACGACAGC
CATTGCCCGC CGCAGCTGAA AGGCCGCATC GAGCACTTCA TTCACCGAAA GGCAATGAAT
ATCGAAAGCT TGGGCGAAGG TAAAATCGAG TTGCTTTTCG ACCTGGACCT CGTGCGCACA
CCCGCAGACC TGTACGACCT CAATCACGAC AAACTGCTCG GCCTCGAAAA GAACCTGCTG
AACGAAGAAA CGGGCAAATT GAAAAAGATC AGTTTCAGGG AAAAAACGGT AGAAAACATC
CTGAAAGGCA TAGAGGTGTC GCGGACCGTG CCGTTCAAAA ACGTGCTTTT CGCATTGGGA
ATCCGCTTTG TGGGACAAAC GGTGGCCGAA AAGCTCGCGG CGTATTTCAA ATCCATGCGC
GCATTGCGGG CGGCAACTTA CGAGCAGCTC ACCGCCGTGC CCGAAATCGG CGGGCGCATT
GCATTGAGTA TCGAATCGTT TTTCAGCGTG CCGGAAAATC AAATGCTCGT TGAGCGACTG
GAACGCGCCG GTTTGCAAAT GGAAAGCGAT GAAAAGCCGG TGGAGATCGA AAGCGACTTG
CTTGACGGCA AAACGTTCGT GATTTCGGGC GTGTTCGAGA ATTTCGAGCG CGACGAGCTG
AAAGAGAAGA TCGAAGCGAA CGGCGGAAAG GTGCTCAGCG GCGTGTCCGG GAAGCTCAAT
TACCTGCTCG CCGGCGCCAA TATGGGCCCT TCCAAACTCG AAAAAGCACG TAAACTGGGC
GTTACAATCA TCTCCGAAGA AGAATTTTTA GCAATGATTG GAAATTAA
|
|---|
| Protein sequence | MNPEQRIQEL SEKLHYYNDR YYQDSVSEIS DYEFDQLLKE LQALESEYPQ FRQDDSPTQR
VGGTVTKSFN AVYHRYPMLS LDNTYNEDEL RSFDDRVRRG LDGEAYEYIC ELKFDGISLS
FTYENGVLVR GVTRGDGTRG DEITNNVKTI RSLPLRVKAD GIPPVFEIRG EGFMPISSFQ
KLNEEMETLG ENQYANPRNA ASGSFKLQDS AEAARRGLDS YIYSFLSDNA FFKSHEESLL
ALKSWGFNVS PGWKKVSTID EVIAYIHEWE EKRAHLPLAT DGIVIKINSF EQQRELGFTA
KSPRWAISYK YKAENKPAVL RMVTYQVGRT GAVTPVANLC DLSERALPYN QVKGVHLSGT
RVKRATLHNA NELERLGVRL NDTVFVEKSG EIIPKITGVD VSQRENYETE PVIFPTHCPE
CGHELQRNEG EVAFFCPNDS HCPPQLKGRI EHFIHRKAMN IESLGEGKIE LLFDLDLVRT
PADLYDLNHD KLLGLEKNLL NEETGKLKKI SFREKTVENI LKGIEVSRTV PFKNVLFALG
IRFVGQTVAE KLAAYFKSMR ALRAATYEQL TAVPEIGGRI ALSIESFFSV PENQMLVERL
ERAGLQMESD EKPVEIESDL LDGKTFVISG VFENFERDEL KEKIEANGGK VLSGVSGKLN
YLLAGANMGP SKLEKARKLG VTIISEEEFL AMIGN
|
|---|
| |