Gene Dfer_5109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5109 
Symbol 
ID8228716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand- 
Start bp6172858 
End bp6173505 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content54% 
IMG OID644932957 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_003089474 
Protein GI255038853 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0277689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.123014 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAA TTGCCCCTTC CATACTCGCC GCGGATTTTG CGAACCTGCA ACGCGACGTC 
GAAATGATCA ATAACAGTTC CGCAGGTTAC ATTCATGTGG ATATCATGGA CGGCATGTTT 
GTGCCGAACA TTTCATTCGG GTTACCCGTG TGCGAAGCCA TTCACCGGCA TGCCAAAAAG 
CCGCTGGATG TGCACCTGAT GATCGAGCAG CCCGACCGCT ACCTCGAAGC ATTCCGCAAT 
GCGGGCGCGT CGGGGATTAC GGTACATTAT GAGGCTTGTC CGCATTTGCA CCGCACGATC 
CAGCACATTA AAGAGCTTGG TGCGGAACCG GGCGTGGCGC TCAACCCGCA TACACCCGTG 
GAAGTGCTGA GCGAAATCAT GGGCGATGTT TCGCTCATCC TGATCATGTC CGTGAACCCT 
GGTTTCGGCG GGCAGAAATT CATTGAGAAT ACATATAAGA AGATCGCGAC GCTCGACCGT 
TACCGCAAAG AATTTGGCTA CAATTTCAAG ATTGAGGTCG ATGGCGGCGT TAATCTCAAC 
AATGCCCCCC GACTCGTACG CGAAGGTGTC GATATCCTGG TGGCCGGAAG CTTCGTTTTC 
ACGTCGCCCG ATCCGGCAAA GACGATCGCC GAGCTGGGCA ATAGCTAG
 
Protein sequence
MAEIAPSILA ADFANLQRDV EMINNSSAGY IHVDIMDGMF VPNISFGLPV CEAIHRHAKK 
PLDVHLMIEQ PDRYLEAFRN AGASGITVHY EACPHLHRTI QHIKELGAEP GVALNPHTPV 
EVLSEIMGDV SLILIMSVNP GFGGQKFIEN TYKKIATLDR YRKEFGYNFK IEVDGGVNLN 
NAPRLVREGV DILVAGSFVF TSPDPAKTIA ELGNS