| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4879 |
|---|
| Symbol | |
|---|
| ID | 8228485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5903073 |
|---|
| End bp | 5904137 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644932728 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003089245 |
|---|
| Protein GI | 255038624 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.77144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.328602 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAGA AAATTGTCAG AATTAAAGAT ATTGCGGAGC GGGCACAGAC CTCCAAAGGC
ACGGTGGACC GCGTTTTACA TAACCGCGGG CGGGTAGCCG ACGATGTGCG TGAACGAATC
CTGGCGATCA TCAAGGAGCT GAACTATGAG CCCAACCTGA TAGCGCAATC CCTGAAATCG
CAACGGGCAT TCAACCTCGC CGCCCTCATC CCCGACCCCA ACCTCGACTC GTACTGGGAA
GCGCCGCATG ATGGCCTCGA AAAGGCCGAG AAAGAGCTCC GGCAATATGG TGTGCATATC
AGCAAGTTCA TTTTCAACTC ACATGCCGAG CCGTCGTTCA TCGCGAAAGC CAAAGAAGTT
ACACGCGAGC ATCCGGACGG ACTGCTCATT GCGCCTATCT TTTACAAGGA AGCATTGCCG
TTTTTTAAGG AATGGGAGGA AATGGGCATT CCTTATGTGC TTTTCAACAC GCAGATCGAA
CATGTGAACC CGCTGTGCTA CATTGGCCAG GACTCTTACC GTAGCGGCTC GCTGGCGGCT
AAAATCCTTC GGTTCGGACT GCATTCGCCC GGAACGGTGC TGGTTGCGCA CGTGAACGAG
GATATTTCCA ATTCGGCGCA TTTGATTACC AAAGAAGACG GCTTCCGCGA CTATTTCAAA
GGCGAAAAGC TGGACGATAC GTTTAAAGTA ATCAGTAAGG AGATTAATTT CCCCGATGAA
GAAGGGCCGG ACAAGCAGCT CGACGAGCTC CGCCAGCAAT ACCCCGACCT CGGCGCGGTG
TACGTCACCA ATTCGAAGGC ATTTGAAGTG GCCGCCTACC TCGAAAAGAA TGCATTAACG
GACATTAAAC TCGTAGGTTA CGACCTGATC GAACATAACC AGCAATACCT CAATAAGGGC
ATTATTGATT TCCTGATCAA CCAGAACCCG CTGGGCCAGG GATACTGGGG CATTCACCAA
CTGGCCAACC ATTTGATTTT CAAGAAAGAG ATCCCGGCTA TCAAGTTCCT TCCGCTTGAC
ATTATCACGA AAGAAAACCT GGATTACTAC CTCGATCCCC AGTAG
|
|---|
| Protein sequence | MKKKIVRIKD IAERAQTSKG TVDRVLHNRG RVADDVRERI LAIIKELNYE PNLIAQSLKS
QRAFNLAALI PDPNLDSYWE APHDGLEKAE KELRQYGVHI SKFIFNSHAE PSFIAKAKEV
TREHPDGLLI APIFYKEALP FFKEWEEMGI PYVLFNTQIE HVNPLCYIGQ DSYRSGSLAA
KILRFGLHSP GTVLVAHVNE DISNSAHLIT KEDGFRDYFK GEKLDDTFKV ISKEINFPDE
EGPDKQLDEL RQQYPDLGAV YVTNSKAFEV AAYLEKNALT DIKLVGYDLI EHNQQYLNKG
IIDFLINQNP LGQGYWGIHQ LANHLIFKKE IPAIKFLPLD IITKENLDYY LDPQ
|
|---|
| |