Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4856 |
Symbol | |
ID | 8228462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 5869719 |
End bp | 5872178 |
Gene Length | 2460 bp |
Protein Length | 819 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644932705 |
Product | TonB-dependent receptor |
Protein accession | YP_003089222 |
Protein GI | 255038601 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.163752 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTTA CCTCGATGAA AACTTTACTT CAACTACTCA TGTCCATTCT GATCCCGGGG CTGATCTGCT GCCAGGATTC ATTTGCCCAG GTCGCTCCCG CGGGCGGGAG TATCAAAGGC ATCGTGGCCG ATTCCGCTTC CGGTAAAACG CTGGATTTTA TTACCATTAA CCTCATGAAG GACAAAACCA CCGCCGTGAA AGCCGATTTT TCCAAGGGCG ACGGTTCTTT TGTTTTCGCG AACCTGAAAC CGATGAAGTA CATGGTGGTG CTCGTGGGCG TGGGATACAA AAGCAGGTCC ATCGACGTCG ATCTTGCAGA CAGCACCCGC CGGCATGTCG ATTTGGGCCA GGTTACCATC AGTCCGCAGG CCGTAGGGCT TAAAGAAGTG ACGGTTACCG CATTGAAACC CATTGTAAAG CAGGAGGTCG ACCGCATTAG TTACGACCTC GAAGCCGATC CCGAAAGCAA AGTGTACAGC GTGCTGGATA TGATGCGGAA AGTGCCTTAC CTGTCGCTCG ATGCCGAGGA TAACATTTTC CTGAAAGGCA ATGCAGATTT CAGGATATTG ATCAACGGGA AGCCGTCGAG TATGGTCGAG CGGAGCTACA AGGACGTGCT GCGGAGTATG CCGGCATCGT CTATCGTGCG GATCGAAGTG ATTACTACGC CGCCGGCAAA ATACGATGCG GAAGGGCTAG CAGGAATTAT CAACATTATT ACCAACAAAA AAATCGACAA CGGGTATAAT GGTACCCTCA ACGTCAGTGA ACGGTTCCCG ACAGGCGGGC CGGGAGTCGG TGGTTCGCTC TCGGCCCAGC TCGGGAAGGT GGGAATGTCG GTAAATGCCG GTTTGAGCCA GTATATCAAC CCTTCCACAC AATCGATTAC CAACCGGGTC ACGACGGGCA TTGACCCAAC GGAGCTCAAC CAGCGCGGGT GGAACAAGGT GAATAACAAA AACGGCTACA TTGGCTATGA GATTACCTAT GAGGTTGATA CGCTCAACTT GCTGAGCGCG CAATTGAACG TCAATGGCGG CCGGAACCGG GAGAATGGCT ACCAATCGTC GCTCCTGAAC GGCGGCGACG AAATCCTGGA ACGTTATAAT GTCACCAATG CCAGTTCCGA CCGCGGCACA GGCCGGGATG CGGCCGTGAA TTATCAAAAG GGTTTCAAAG CGGATAAGAA CCGGTTGCTC ACCTTTTCTT ACCGCTATTA CGGCTACGAC AACAAGCAAA AAGGCAACCT CAACATTTCG GACCGCATTA ATTACGAGCG CCCGGATTAC CGGCAGATCA ACGACCAGAG CTTTTCGGAG CAGACATTCC AGGTGGACCT CGTGTACCCG GTCAAAAAGC TCAGTATCGA AGCCGGTATC AAAGGCATTG TGCGCGACAA TAAGAGCGAT TTTCAATACC AGGTTTTCAA TGCAGAAACC AATTCCTACG ACCTGGATGC GGGCATGAGC AACAAATACA ACAACATGCA AAAGGTGTTC GGGGCATACA ATACTTACCA GTATAACTGG AAGAACTGGG GCATTAAGGC AGGCGCACGG GTGGAGCAGA CGATCATTGA TGCGGACTTC ATTTCAACGG ATTCGAAAGT GAAGCAAAAC TATTTCAACC TGATCCCCTC CGTATCGGTT AACCGGAAGC TTAAAAACAA TGCGGGTATC AATTTAGGGT ACAGCCAGCG CATTCAGCGG CCGGGCATCT GGCAGCTCAA TCCGTTCGTC GACCGGTCGA ACCCGAGTTT CGAACGCACG GGTAATCCGG ACCTCCGGCC GGCATTCGTG AACGATCTGC AATTGAGCTT CAACAAGGCC AAAAAAGGAA ATATCAACTT CGGCGTCGGC TACACCCATT TCAAAGACCT CATTTTCCAG ATCGCCGTAT TTGACCCCGA AACACAGATC ACGCGCAGGT CTTATGGCAA CACAGGCCGC GCCAGGCTCA TCAGCGGTTT GCTGAATGCC AATTATCCGA TCACAAAAAA CTGGAATTTC AGCACCAATC TGCGCATTGC GCACGGCAAG GTAACGGGGT TGGTGAATGG CGTGGAGATC ACCAATAGCG GATTGATGTA CCAGTTTGCG CTCTCCACCG GCTACCGGTT GCCCAAAGAC TGGCGCGTGA ATGCCAACTT CAATGCAAAC GGGCCGAGCG TGAACCTGCA AGGCACCTCC AATTCCATCC AGAGCACGTC GTTCAGCGTG AATAAGGATG TGGTGAAGGA TAAATTGTCG GTTTCGGCTG CGGTGAGCAA TCCTTTTACG AAATTCAGGA GGTTCCACAA TGTAACATCA GGCCCGGATT TCGATCAGTT CAACGATCGC TGGAGCTATT TCCGGTCGTA CAATTTCAGT GTGAACTACA AGTTCGGAAA GCTGAAAAAT GGTATTAAAA AGAACAAAAG AGGCATTCGC AACGACGACG TGCAGAATGG CGGAAACTGA
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Protein sequence | MNFTSMKTLL QLLMSILIPG LICCQDSFAQ VAPAGGSIKG IVADSASGKT LDFITINLMK DKTTAVKADF SKGDGSFVFA NLKPMKYMVV LVGVGYKSRS IDVDLADSTR RHVDLGQVTI SPQAVGLKEV TVTALKPIVK QEVDRISYDL EADPESKVYS VLDMMRKVPY LSLDAEDNIF LKGNADFRIL INGKPSSMVE RSYKDVLRSM PASSIVRIEV ITTPPAKYDA EGLAGIINII TNKKIDNGYN GTLNVSERFP TGGPGVGGSL SAQLGKVGMS VNAGLSQYIN PSTQSITNRV TTGIDPTELN QRGWNKVNNK NGYIGYEITY EVDTLNLLSA QLNVNGGRNR ENGYQSSLLN GGDEILERYN VTNASSDRGT GRDAAVNYQK GFKADKNRLL TFSYRYYGYD NKQKGNLNIS DRINYERPDY RQINDQSFSE QTFQVDLVYP VKKLSIEAGI KGIVRDNKSD FQYQVFNAET NSYDLDAGMS NKYNNMQKVF GAYNTYQYNW KNWGIKAGAR VEQTIIDADF ISTDSKVKQN YFNLIPSVSV NRKLKNNAGI NLGYSQRIQR PGIWQLNPFV DRSNPSFERT GNPDLRPAFV NDLQLSFNKA KKGNINFGVG YTHFKDLIFQ IAVFDPETQI TRRSYGNTGR ARLISGLLNA NYPITKNWNF STNLRIAHGK VTGLVNGVEI TNSGLMYQFA LSTGYRLPKD WRVNANFNAN GPSVNLQGTS NSIQSTSFSV NKDVVKDKLS VSAAVSNPFT KFRRFHNVTS GPDFDQFNDR WSYFRSYNFS VNYKFGKLKN GIKKNKRGIR NDDVQNGGN
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