| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4781 |
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| Symbol | |
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| ID | 8228387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5780551 |
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| End bp | 5783910 |
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| Gene Length | 3360 bp |
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| Protein Length | 1119 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644932630 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003089147 |
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| Protein GI | 255038526 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000704544 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00536077 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCTTT TCTATCGGAT CAGTGGCCCG AGTCGGCTGG TTGTGTTGCT CCTGGGTGTC
TTCTTTCTGT CCGTTTCCGC CTCTCCGTTT TCTTCTTTTG CATTTGCCGC CGATATCGAC
GTGCGGGGCG TGGTGAAAAG CGTGGCCGGC GAGCCGCTGA TCGGTTCCAC GGTGCGGGTG
AAGGGCTTGC AGAAAGGCAC AGTCACCAAT GAGAAAGGCG AGTTTTTGTT GCAGGGTGTG
AATGAAAATG CGACGCTCGT CATCACCATG ATCGGTTTCC TGCCGAAAGA AGTCAAAGCC
GCCCGTAACC TGACGATCGA GCTTGCCGAA GATGCCGTAG GCTTGCAGGA CGTGGTCGTG
ACCGGTTTTC AACAAATCGA CAAGGATAAA TTTACCGGAT CGGCTGTGAC GCTGAAAACG
GATGATGTGA AGATCGACGG TCTGCCCGAC GTGAGCCGGA TGCTCGAAGG CCGTGCCGCA
GGCGTGTCGA TCCAGAACGT TTCCGGCACA TTCGGGGCGG CGCCCAAGAT CCGTATCCGC
GGGGCCACTT CGCTGAATGG CGCCAACAAG CCGCTCTGGG TAATCGACGG CGTGGTGCAG
GAGGATATTG TGAACATTTC GAACGATCAG CTTTCCAGCG GCGACCCTAC CACCTTGCTG
GGCTCGGCCG TAGCGGGCCT CAACCCGAAT GATATCGAAA CATTCGACAT ATTAAAGGAT
GCCGCCGCCG CCGCATTGTA CGGCGCCCGT GCGATGAACG GCGTGATCGT GATCACCACC
AAAAAAGGAA AGAGCGGCAA GCCGGTGATT ACCTATTCGG GAAATTTCAG CACGCAGCTC
GTGCCGTCTT ACCGGAACTT CAACATCATG AACTCGGCGC AGCAAATGTC GGTGCTGGGA
AATTTGGAAC GGGACGGTTA TCTAGGTACG AATGTCCTTT CCAAGCCCGA CTACGGCGTG
TATGGGAAGC TTTATAATCT GATCCAGGTA GGTAACGACC AGGGCGATTT TGACCTGATG
AATAACCCGG CCAAGAGACG TGAGTTTTTG TTAGGCTACG CGAAAGCCAA TACCGACTGG
TTCGATGTCC TTTTCAAGCA AAATTTTATT CATGAACATT CGCTGAGCGT TTCGTTTGGG
ACGGATAAGT CTAATTCGTA CGCCTCGGTA AGTTACCTGG ACGATAACGG CTGGACGATC
GCGGATAAGG TTAAAAGATA TACCCTCAAT TTTAATAACA ACTACCAGCT CTCCGACCGC
CTCAGCATTG GCTTGACCAC GCTGGCCTCG GTAAGGCGGC AACAGGCGCC AGGCTCTTTG
AGTAGAAGAA GTAACCCGGT CGAGGGCAAG TTCGACCGCG ATTTTGACAT TAATCCGTTC
AGTTATGCAT TGAATACGAG CCGAACGCTC ACTGCTTACG ACCAGAATGG CAATCTTGAA
TTCTTTCGGA GGAACTTCGC TCCGTTCAAT ATAGTCTCCG AGCTGGCCAA CAACCGGCTT
AACCTGACAT TGGCCGACAT TAAATTGCAA GGCAACCTTT CCTATAAGAT CACGGATAAC
CTGAGCTACG ATTTCCTGGG CGCATTGAGG TACATCCAGA CGGGCCGTGA GCACATGATC
ACCGAGCACA GCAATATGGC GAATGCTTAT CGCGCGGCCG ACAATGCTAC CATTGCAGCG
GCTAATAAGT ATCTCTACGT CGATCCCGAT GACCCGAATG CGAATCCCGT GGTGGTGTTG
CCAAGCGGGG GGTTCTACAA CCGCAATGAG GACCAGATGC TTTTTTACAA CGTCAGGAAC
AACCTGCGCT ACAACCAGAA GTTTGGTGAA AGGCACGAGG TCAATGCATT GGTGGGCCAG
GAAGTGAAAT TCACTAACCG CCAGAACTCC AATAATACCG GTTACGGGTT CCAGTACGAT
CAGGGCAGCA CCCCATTTGT GGACTACCGC ATTTTGAAAC AAACCATTGA AACCAACTTC
CAATACTACG GAATGCAGAT GGACTATGAG CGGTTTGCAG CATTCTACGG CAGCCTTGGT
TACACGCTGG ACGGAAAGTA TAACGTGACG GGTTACGTTC GTTACGACGG ATCGAACCGC
TTCGGCAAGT CGGCTATCGC GCGGTGGCTG CCTACCTACA CCATTGCCGG TTCCTGGAAC
TTCGATCGCG AGAATTTTTT CAAAAACCTC AGTTGGCTGA GCATGGGGCG CTTGCGGTTG
AGCTACGGGC TTTCGGCGGA TACCGGTCCG GCGACCAATG CAGCAGTATT ATTGCAAAGT
ATCATCACGC GCCGGCCGTA TGCGGACGAG AAGGAGTCGG CGATACAGCT TGCTGCGCTG
CAAAATACCC AGCTTACCTG GGAAAAATTG TACAGCGGCA ACGTCGGGTT GGACGTTGGA
TTGTTCGCCA ATCGCATCAA TTTCACATTG GACGGCTACA TTCGAAACAG CTTCGACCTG
ATCGATCAGA TTAAAACTTC CGGAATCGGT GGGCAGATTT ACAAGGTCGC CAACTACGCA
GATATGGAGT CCTATGGTGC CGACTTTTCT GTGGATGGGG TGCTGTTGAA AACCCGCGAT
TGGGATTTCC GCTCCCGCAT TACGTTCGGC TACTCGCACA CGCTCATCAC GAATGTGGAT
AACAGCCCGG GCATATTCGA TCTCGTGAAA GCCGAAGGCG CGAATGTGCA GGGCAAGCCG
GTGCGCAGCC TTTATTCGAT CGATTATAAT GCGCTGAACC CTAAAACAGG TGTGCCGATT
TTTATCAATG AAAAAGGAGA AGTAAGCCAG GATGTGTATT TGCAGGATCA GAATATTCAG
TACCTCAAAT ACGAAGGTCC GGTGGACCCG CCATTTACCG GTGGCTTTAA TAATACATTG
ACTTATAAAG GATTGACGCT GAACGTATTC TTTACCTATC AGGCAGGTAA TAAGATCAGG
CTCAACCCGC TGTTCCGCGG CACATTCAGT GACCTCGATG CGACGCCCAA AGAGTTTTAC
GACCGTTGGG TAATTCCAGG CGATGAGCGT TATGGCGCCA ATCCCTCGAT TTCGGATCAA
CTGGAAATGC TATATCTGCA AGGTACTTAT CCCTATAACG TCTTTAACTA TTCGACCGAA
CGTGTTGCGA AAGGGGATTT TGTGCGGTTG AAATCGGTTT CGCTGGCGTA CAAGCTGCCG
TTGCAGGTGA TTTCCCGCTA CGGATTTTCA GCGGCAAGCA TTCAGCTGTC GTCGATTAAC
CCGTGGCTGA TTTATTCGGA TAAAAAACTG AAAGGGCAAG ATCCTGAGTT CTTCAATTCG
GGTGGTGTGG CGCAGCCTGT GCAGAAGCAA TTCACGGTGG CTTTGAAATT GACATTGTAA
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| Protein sequence | MNLFYRISGP SRLVVLLLGV FFLSVSASPF SSFAFAADID VRGVVKSVAG EPLIGSTVRV
KGLQKGTVTN EKGEFLLQGV NENATLVITM IGFLPKEVKA ARNLTIELAE DAVGLQDVVV
TGFQQIDKDK FTGSAVTLKT DDVKIDGLPD VSRMLEGRAA GVSIQNVSGT FGAAPKIRIR
GATSLNGANK PLWVIDGVVQ EDIVNISNDQ LSSGDPTTLL GSAVAGLNPN DIETFDILKD
AAAAALYGAR AMNGVIVITT KKGKSGKPVI TYSGNFSTQL VPSYRNFNIM NSAQQMSVLG
NLERDGYLGT NVLSKPDYGV YGKLYNLIQV GNDQGDFDLM NNPAKRREFL LGYAKANTDW
FDVLFKQNFI HEHSLSVSFG TDKSNSYASV SYLDDNGWTI ADKVKRYTLN FNNNYQLSDR
LSIGLTTLAS VRRQQAPGSL SRRSNPVEGK FDRDFDINPF SYALNTSRTL TAYDQNGNLE
FFRRNFAPFN IVSELANNRL NLTLADIKLQ GNLSYKITDN LSYDFLGALR YIQTGREHMI
TEHSNMANAY RAADNATIAA ANKYLYVDPD DPNANPVVVL PSGGFYNRNE DQMLFYNVRN
NLRYNQKFGE RHEVNALVGQ EVKFTNRQNS NNTGYGFQYD QGSTPFVDYR ILKQTIETNF
QYYGMQMDYE RFAAFYGSLG YTLDGKYNVT GYVRYDGSNR FGKSAIARWL PTYTIAGSWN
FDRENFFKNL SWLSMGRLRL SYGLSADTGP ATNAAVLLQS IITRRPYADE KESAIQLAAL
QNTQLTWEKL YSGNVGLDVG LFANRINFTL DGYIRNSFDL IDQIKTSGIG GQIYKVANYA
DMESYGADFS VDGVLLKTRD WDFRSRITFG YSHTLITNVD NSPGIFDLVK AEGANVQGKP
VRSLYSIDYN ALNPKTGVPI FINEKGEVSQ DVYLQDQNIQ YLKYEGPVDP PFTGGFNNTL
TYKGLTLNVF FTYQAGNKIR LNPLFRGTFS DLDATPKEFY DRWVIPGDER YGANPSISDQ
LEMLYLQGTY PYNVFNYSTE RVAKGDFVRL KSVSLAYKLP LQVISRYGFS AASIQLSSIN
PWLIYSDKKL KGQDPEFFNS GGVAQPVQKQ FTVALKLTL
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