| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4539 |
|---|
| Symbol | |
|---|
| ID | 8228142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5475729 |
|---|
| End bp | 5477255 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644932385 |
|---|
| Product | malate:quinone oxidoreductase |
|---|
| Protein accession | YP_003088905 |
|---|
| Protein GI | 255038284 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0579] Predicted dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01320] malate:quinone-oxidoreductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.871136 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCA AAAAGTCTTC AAAAACGAGC TCACCTGACG TGGTTTTGAT TGGGGCAGGC
ATTATGAGCG CTACGCTCGG GGTTCTACTA AAAAAGCTTA ATCCGGCCAT TACCATTTCC
GTGTTCGAAC GTCTGGACCG CGTCACTGCG GAGAGCTCCG ATCCCTGGAA TAATGCCGGC
ACCGGCCATT CCGCATTTTG CGAACTGAAC TACACGCCGC AACTTGCCGA CGGTTCCATC
GAAACCAAAA AAGCGATTAA GATCGCCGAG TCTTTCGAAG TTTCGAAGGA ATTTTGGGCG
TATCTTGTAG AGAATGGCGT GATTGATTCG CCTGATGCTT TTATCCACAA CATTCCCCAC
CTGAGCTTTG TGTGGGGCGA GGAAAACGTG GATTATCTAC GCAAACGTTA CGAGGCCTTG
ACGAGCCACC ACCTTTTTCA CGGAATGGAA TACACCGAGG ATAAGGATGT GATCGCCAAC
TGGGCCCCGC TTGTGATGAA CGGTCGCGGT GCCGATGAAA AAGTTGCCGC TACCCGCATG
GAGCTGGGCA CCGACGTCAA CTTCGGCGCG CTTACTAAGG CGATGTTCGA ATATCTTGAA
AAACAGGATG GCGTCAATCT CTTCCTGAAC TATGAGGTTG ATGACCTGAC GCGCAAAAAA
GACAATTCGT GGCTGATTGA AGTGAAGGAC CGCGCGACCC GGAAAGAGAG CAAGGTTACT
GCGAAATTCG TATTCATCGG TGCAGGCGGA GGCTCCTTAC CACTGCTCGA AAAATCAAAT
ATTCCCGAAG GAAAAGGCTT TGGCGGCTTC CCGGTGAGCG GACAATGGCT CGTGTGTAAC
AAGCCGGAGA TCATCGAAAA ACACCAGGCG AAAGTGTATG GCAAGGCCTC TGTGGGATCG
CCTCCGATGT CGGTTCCACA CTTGGATACC CGGGTTATAG ATGGTAAAAA AGCGCTTCTA
TTCGGGCCAT ATGCCGGTTT TTCAACGAAG TTCCTGAAAA ATGGCTCCTA TCTCGACCTT
CCGCTTTCCA TTAAGCTGAA TAATATCAAA CCGATGCTGG CAGCTGGCCT GCATAACATC
CCGCTGACCA AATATCTGAT CGATCAGGTA AGACAGTCGC CTCAGGACAG GCTCCAAGCC
CTGAAAGATT ATTTCCCGGA AGCGAAACTG GAAGATTGGG ATCTGGAAAC GGCCGGCCAG
CGCGTGCAGG TGATCAAAAA AGACAAAAAA GCGGGCGGAG TGCTCGAATT CGGGACCGAA
ATGGTTACCG CAGGCGACGG CTCACTCGCT GCATTGCTGG GTGCGTCTCC GGGTGCTTCC
ACAGCGGTGT CGATCATGCT CGACCTGATT CACCGTTGCT TTGCAGAAGC CAAAACGCCG
GAATGGCAGC GTGAATTCAA GAAAATCATC CCTTCATTCG GAAAGTCACT TTCCAAAGAG
AAGGAGCTCG CCGCAAAAAC CCGCGCCTGG ACTACCGAAG TGCTCCATTT GAGCGCCTCG
CATCTGGAAG CAGAAATGAC TGCGTAG
|
|---|
| Protein sequence | MNTKKSSKTS SPDVVLIGAG IMSATLGVLL KKLNPAITIS VFERLDRVTA ESSDPWNNAG
TGHSAFCELN YTPQLADGSI ETKKAIKIAE SFEVSKEFWA YLVENGVIDS PDAFIHNIPH
LSFVWGEENV DYLRKRYEAL TSHHLFHGME YTEDKDVIAN WAPLVMNGRG ADEKVAATRM
ELGTDVNFGA LTKAMFEYLE KQDGVNLFLN YEVDDLTRKK DNSWLIEVKD RATRKESKVT
AKFVFIGAGG GSLPLLEKSN IPEGKGFGGF PVSGQWLVCN KPEIIEKHQA KVYGKASVGS
PPMSVPHLDT RVIDGKKALL FGPYAGFSTK FLKNGSYLDL PLSIKLNNIK PMLAAGLHNI
PLTKYLIDQV RQSPQDRLQA LKDYFPEAKL EDWDLETAGQ RVQVIKKDKK AGGVLEFGTE
MVTAGDGSLA ALLGASPGAS TAVSIMLDLI HRCFAEAKTP EWQREFKKII PSFGKSLSKE
KELAAKTRAW TTEVLHLSAS HLEAEMTA
|
|---|
| |