| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4456 |
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| Symbol | |
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| ID | 8228059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5374550 |
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| End bp | 5377582 |
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| Gene Length | 3033 bp |
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| Protein Length | 1010 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644932302 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088822 |
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| Protein GI | 255038201 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000450006 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.634618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTA TTGTACGATT ACTGTACATG CTCGTTTTCC TGGCGGTAGG GAATATCGCC
TTCGCACAGG AAATAAATGT GACTGGGAAA GTCACATCGA GTGCAGATAA TTCGGCGCTG
CCGGGCGCCA GTGTGCTCAT CAAAGGCACC ACCACCGGTG TTCCTACCGA TGCCGAGGGT
AACTACGCCA TAAAAGTCCC GTCCACGCAA TCCACCCTCG TATTCTCGAT GATCGGAATG
ACACCCCAGG AAATCACAGT GGGCAACCAA ACCACTGTGA ATGTTGCGCT GGCCGAAGAC
GCCAAAGCAT TGAATGAAGT GCTGGTGGTG GGTTACGGTT CCCAAAAGAA ACTTGACGTA
ACGGGCGCTA TCACGCAAAT CAAGGGTGCC GAAATCGCGA AACAGCCTTC TATGAATGCC
GTCAGCGGTT TGCAGGGTAA GGTTGCCGGT GTGCAGATCA ACAACTCCGG TAAGCCGGGC
GAGGCGCCGC AGATCCGCAT CCGCGGTGTA GGAACAGCTT ACGGCAGCGC CAACCCGCTA
TATGTGGTGG ACGGTGTGTG GTTCGACGAT ATCAGCTTCC TCAACTCAGG CGACATCGAG
AGCATGAACA TCCTGAAAGA TGCTTCCAGC CAATCCATTT ACGGGGTGCG CGCAGCAAAC
GGGGTGGTAC TGATTACAAC CAAAAAGGGC AAATCAGGCC AGGCTGTCAT CGATTACAAT
GGTTTTGTGG GTTACCAGAA AGTGACCAAC CAGATCGAAA TGGCGAATGG AAACGAGTAC
GCCACGATGA TCAACGAGCT GAGCCGCATT AACGGTAAAC CGGACATTCT CGACCCCGCG
CAATTCGGCG AAGGCACCGA CTGGTACCGC CAGATCCTGC GTAACGGATT CCTGACCAAC
CACCAGCTTT CGATCAGCGG TGGCGGTGAA AAATCAACCT ACAACTTCTC ACTTGGTTAC
CTGGATCAGA ACGGTATCGT GGAGAGAAAC AATTTCAAGC GCTACACGGC ACGTTTGCAA
AATGATTTCC AGGTGCTGAA AAACCTGAAA GTCGGCTATT CTGCAACCGC TTCTTACAGC
AAATCGAAAG ATGAAGCAGG CGGCATTTTC CGTCAGTTGT ACGCGGCTGG CCCGGTTGTT
CCTGTATACT ACGCCGATGG TACTTATGGT GATCCCAACG ATTTCAGCCT TGGGGACGGT
AATAACTTCA ACCCACAGGT AACAGTCGAT TTTTATAATC AAAACACCAA AAAAACGCTG
CTTACCGGTA ATGCCTACGC AGAACTTTCG CTTTTCAAAG GCCTGACATT CCGCAGCAGC
CTCGGCGGCC GTTACGGACA GGACGAAACC CGCACTTATG TGCCGCAATA CGTGGCGACA
TTCAAGCAGC GCAATACGAC CAGCTTCCTG GAATTCGTTC GTCCGCAGAC CCGCTACTGG
ATTTTTGAAA ATACATTGAC CTACACCAAA GATTTCGGTC AGCACAGCAT TACTGCATTG
CTCGGTCAAT CCGCACAGCG CGACCAGTCG TACAAGGTTA CGGCCAATGC ATTAAACGTG
CCATACAGCA GCGAAGGCGA TTTATACCTG GCATTAGGTA GCGCCGACAG CCGTAACATC
ACCGACGAAG GCGATCTCGG AACCTATGCT TCATATTTCG GTCGGGTAAA CTACTCTTTC
GGTGAGCGCT ACTTGCTGAA CGCGTCACTT CGTGCCGATG GTTCTTCGAA GTTCTTCCAG
GGCGGCAATG CGTGGGGTTA TTTCCCTTCG GTGGGTGCAG GCTGGGTGAT CAGCAATGAA
GACTTCATGA AAGGCCAGAC GATTTTCGAC AACCTGAAAA TCCGCGGTAG CTGGGGTAAG
ATCGGTAATG CATCCGTGCC TTCCAACCTT TCTACACTGA CCGTAGCCAC TGGCGGCGGC
CTGGCGGCGA TCTTCGGCGG GCAGCTGAAT ACCGGTGCGA GCATTAACAC GATCATCCCT
CCTACCACTT ACTGGGAGCG CGGTGTAGGT ACCGACGCGG GTATCGAAGC TTCATTCCTG
AAATCGCGGT TGACGGTTGA ATTGGATTAT TATATCAAGA AAACCGAACG TGCGATTTTC
GACATTCCGG TACTGACTTC CATCGGTACA AGCTCTGGCC GCATCGTGGG TAACCAGGCC
GACTTCCAGA ATAAAGGTTT TGAATTCGCA TTGAACTGGC GTGACGACAT CGGCGACGGT
CTTTCTTATA GCGTCGGAGT GAATGGTGCG ATGAACAACA ACAAAGTGCT TTCTGTAACC
TCCGGAGCCA ACCCGATTTA TGACGGTGGC GTGGGCCTCA CGAGCGGCGC GCTCGCCACA
CGTACCCGCG TAGGCGACCC GATCGGCTCA TTCTACGGCT ATGTGGTGGA CGGTATTTTC
CAGAATGAAG AAGAAATCAG AAACTCGGCA CAGCCAAGCG CGAAACCGGG CGATTTCAGA
TACCGCGACA TCAGCGGAAC GAACGGAACC CCGGACGGCA ACATCTCCGG TCTGGACCGC
CAGGTAATCG GTAACCCGAA CCCGAAATTC ACGTACGGTA TCAACACCAG CTGGAATTAC
AAAAATGTGG ACCTGATGCT CGACTTCCAG GGCGTTGCCA AAGTGGATAT CTACAATGCC
AACCTCGGCT GGCGCTATGG TAACGAGAAC TTTACCAAGG ATTTCTACGA AAACAGATGG
CACGGCGAAG GTACTTCGAA CACCTATCCT TCGGCTAACA TCGGAGGCGG CCAGAACTAC
CTGCCGAACA CCTTCTTCGT ACAAAGCGGC AGCTACTTCC GGGTAAGAAA TGCGCAAATC
GGCTACACTT TCCCGCAGGC ATTCAACGAA AAGCTGAAAA TCCGTAAGCT GCGTTTGTAC
GCGAATGCGC AAAACCCTTT GAATTTCTTT AAATACAAAG GCCTGTCGCC GGAGGTGAGA
GCCAACGAAA ACAAACCGAC ACAAGCCAAT ATCGACGCCA ATGTGTACCC GCTTTCAGCG
ACTTACAACT TTGGTATTAA TGTCACTTTC TAA
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| Protein sequence | MKTIVRLLYM LVFLAVGNIA FAQEINVTGK VTSSADNSAL PGASVLIKGT TTGVPTDAEG
NYAIKVPSTQ STLVFSMIGM TPQEITVGNQ TTVNVALAED AKALNEVLVV GYGSQKKLDV
TGAITQIKGA EIAKQPSMNA VSGLQGKVAG VQINNSGKPG EAPQIRIRGV GTAYGSANPL
YVVDGVWFDD ISFLNSGDIE SMNILKDASS QSIYGVRAAN GVVLITTKKG KSGQAVIDYN
GFVGYQKVTN QIEMANGNEY ATMINELSRI NGKPDILDPA QFGEGTDWYR QILRNGFLTN
HQLSISGGGE KSTYNFSLGY LDQNGIVERN NFKRYTARLQ NDFQVLKNLK VGYSATASYS
KSKDEAGGIF RQLYAAGPVV PVYYADGTYG DPNDFSLGDG NNFNPQVTVD FYNQNTKKTL
LTGNAYAELS LFKGLTFRSS LGGRYGQDET RTYVPQYVAT FKQRNTTSFL EFVRPQTRYW
IFENTLTYTK DFGQHSITAL LGQSAQRDQS YKVTANALNV PYSSEGDLYL ALGSADSRNI
TDEGDLGTYA SYFGRVNYSF GERYLLNASL RADGSSKFFQ GGNAWGYFPS VGAGWVISNE
DFMKGQTIFD NLKIRGSWGK IGNASVPSNL STLTVATGGG LAAIFGGQLN TGASINTIIP
PTTYWERGVG TDAGIEASFL KSRLTVELDY YIKKTERAIF DIPVLTSIGT SSGRIVGNQA
DFQNKGFEFA LNWRDDIGDG LSYSVGVNGA MNNNKVLSVT SGANPIYDGG VGLTSGALAT
RTRVGDPIGS FYGYVVDGIF QNEEEIRNSA QPSAKPGDFR YRDISGTNGT PDGNISGLDR
QVIGNPNPKF TYGINTSWNY KNVDLMLDFQ GVAKVDIYNA NLGWRYGNEN FTKDFYENRW
HGEGTSNTYP SANIGGGQNY LPNTFFVQSG SYFRVRNAQI GYTFPQAFNE KLKIRKLRLY
ANAQNPLNFF KYKGLSPEVR ANENKPTQAN IDANVYPLSA TYNFGINVTF
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