| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4401 |
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| Symbol | |
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| ID | 8228004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5315929 |
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| End bp | 5318700 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644932248 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003088768 |
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| Protein GI | 255038147 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGAC TTCTACCTTT AATCCTTATT TGCTGCTGCC TTTTCATCAC CCATTTTTCC
TACGGCCAGA AGGCGCCCGA AAGAAAGATC ACGATGAAAC TCGATTCGGC GCGGTTCGAT
CAGTTTGTGA AGCAGGTGGA AGAACAGACG GGCTACTACT TCTACTACGA CGCTACCCGG
TTCGACAGCC TCACGCTCGA CCTGAATGTG AACAACCTTT CACTGCGCGA AGTCCTCGAT
CAGGTTTTCA AAGGCTCCGA ATTTGAATAC GCCATCGACG CGCAAAAGCG CATTTACGTC
ACGCACGGGC AGAAAATCAT CACACAGCTC ACGCCCGGCC TGTTCAACCC CGAGCGCGCC
GGTGAAAACG ACTCCATTGC CTACGCAGGC CCCGAAAATG ACCTGAAAGA AAAGCTCCTC
TCGACTGCCG AAAGTAAAGT GCACGAAATA GGGATACGAA AGCACCGCAT TACGCCCGGC
AACTCCACCA TCACCGGTTA CGTCAGGAAC GCCGTTACCG GTGAGCCGGT CATCGGCGCG
GCGATCTTCA TTACTTCGCC TTCCATAGGC GTCACCACGG ACGCGCTCGG GCGGTACGCA
CTCACGATCC CGCGCGGGAA ACAGTTGGTG CATATCAAAA GCACCGGCAT GCGCGAAACG
CAGCGACAGG TGATATTGTA TTCTGACGGC AAGCTGGACA TTGAAATGCG CGAAAGCGTG
ATCGCCCTCA AAGAAGTGTC GGTGAAGGCG GGAATGGACA AAAACGTGGT AGGTACGCAA
ATGGGAACCG TGAAATTGAC GATCAAAAAC CTGAAACAGG TACCGACCGT CTTCGGCGAA
ACCGACCTCC TGCGAACCGT GCTCACATTG CCGGGTATCA AATCGGTGGG TGAAAACAGT
ACAGGCCTCA ACGTTCGCGG GGGCTCCGTG GACCAAAACC TGATCCAGTA TAACGACGCC
GTGATCTACA ACCCGTCGCA CCTTTTTGGC TTCTTTTCCG CATTCAATCC CGATGTATTG
AAGGATGTGG AATTGTACAA AAGCACGATC CCGTCGCGGT TCGGCGGCAG GCTGGCATCG
GTGCTCGATA TCAACAGCCG CGACGGTAAC AAGAAGAAAT TCGTGGCATC GGGAGGCGTC
GGGCTGGTTA CCGGGCGTGT TACGCTGGAA GGGCCATTGG TGAAAGACAA GGCTTCGTTT
CTGCTCGGAG GGCGCTCTAC GTATTCAAAC TGGGTGATCC GGGCGCTGGA TAATGATACT
TACAACCGAA GCTCGGCGTC GTTCTACGAT GTGAACCTGC ATTTCAATTA TGAAATCAAT
GAAAGAAACA GCCTTTCACT GACCGGCTAC ACCAGCAGCG ACAAGTTCAG GCTGTACGGC
GATACGCTGT ATTCCTACCA GAACCGGCTG GGCTCCATCA AATGGAAGCA CACGTTCAAT
ACGCGGCTTT ACGGCATATT CACGGCCGCA CATAGCAAAT ACAACTACGC CATGGAGGCC
GAGGGCCTTC CGCTCAACTC CTTTGACCTG AAATTTGATA TTAACCAGTC GAATTTCAAG
GCGGACTTTA CTTATGTGCT GCATCCCAAA CACACGCTCG AATTCGGTTT GAGCACGATT
TACTATAAAC TGCACCCGGG TTCGTTCAAG CCGCGCGGCA CCGAGTCGCT CATCAGGCCC
GACGAACTTG AAGCCGAGCA GGCCACGGAA AGTGCATTGT ACCTGGAAGA CAAATGGGAG
GTGAGCCCGC GGTTGTCGAT TTCAGCTGGT TTACGGTGGT CGATGTTCCA ATACCTGGGA
CCAAAGTTGG TGAACAAGTA TCTCCCCGGT TTCCCGATCG ACTACATTTA CCAGGAAGGT
GTGGAAGAAT ACAAATCAGG CAAGAAGATC AAATCCTACG GCGGGCCTGA ATACCGGGCA
TCGGTGCGGT ACAGCATCTT CGATAACCTT TCGCTCAAAG CGAGCTACAA CACATTGCGG
CAGTACATTC ACCTGCTCAC CAACACGATG ACGGTTTCTC CGACCGACAT CTGGAAACTG
AGCGATCCGT ACATCAAGCC GCAGATCGGC GATCAGCTTT CATTGGGTTT GTACCGGAAT
TTCAGGGGTA ACAAAGTAGA AGTATCGCTC GAAGGTTACT ATAAAAACAT CCGGAACTTC
CTCGATTACA AAGGCGGCGA CTCGCTGTTT ATGAACCACA ACATCGAGGC GGCGGTGATC
AACACCAAGG CGAAAGCTTA CGGGGTGGAA TTCATGATCA AGAAAATGAC CGGAAAGCTT
AACGGCTGGC TCGGCTACAC CTATGCGCGT ACACTCTTGC GCGCCGTGGA CCGCGACTCG
CCCGACGCGC CGAATGGCGG TAATTTTTAT CCGAGCAATT ACGACAAGCC GCACGATTTT
ACGCTGATCT CGAATTATCG CTTCTCGCAC CGGTTCAGCT TGTCGTTCAA CTTTACTTAC
AGCACCGGCC GGCCCTACAC CCCGCCGATT GGAAAATACA TTATCGACGG CGCGCAACGC
GTGTATTACG CCGATCGTAA CCAGTTCCGC ATTCCCGATT ATTACCGGAT GGACCTGGCG
ATGAACATCG AAGGCAACCA CCGCATCAAA AAACTCGCGC ACAGTTCCTG GACGCTGGCG
GTGTACAATC TGCTCGGGCG CAAAAACCCG ACATCGGTGT ATTTCCAGAC AGTTGCCGGA
AGGGTTAACG GTTATCAGCT CTCCATTTTC GGCCAGCCGA TACCAACAGT TACTTACAAT
TTCAGATTCT AA
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| Protein sequence | MKRLLPLILI CCCLFITHFS YGQKAPERKI TMKLDSARFD QFVKQVEEQT GYYFYYDATR
FDSLTLDLNV NNLSLREVLD QVFKGSEFEY AIDAQKRIYV THGQKIITQL TPGLFNPERA
GENDSIAYAG PENDLKEKLL STAESKVHEI GIRKHRITPG NSTITGYVRN AVTGEPVIGA
AIFITSPSIG VTTDALGRYA LTIPRGKQLV HIKSTGMRET QRQVILYSDG KLDIEMRESV
IALKEVSVKA GMDKNVVGTQ MGTVKLTIKN LKQVPTVFGE TDLLRTVLTL PGIKSVGENS
TGLNVRGGSV DQNLIQYNDA VIYNPSHLFG FFSAFNPDVL KDVELYKSTI PSRFGGRLAS
VLDINSRDGN KKKFVASGGV GLVTGRVTLE GPLVKDKASF LLGGRSTYSN WVIRALDNDT
YNRSSASFYD VNLHFNYEIN ERNSLSLTGY TSSDKFRLYG DTLYSYQNRL GSIKWKHTFN
TRLYGIFTAA HSKYNYAMEA EGLPLNSFDL KFDINQSNFK ADFTYVLHPK HTLEFGLSTI
YYKLHPGSFK PRGTESLIRP DELEAEQATE SALYLEDKWE VSPRLSISAG LRWSMFQYLG
PKLVNKYLPG FPIDYIYQEG VEEYKSGKKI KSYGGPEYRA SVRYSIFDNL SLKASYNTLR
QYIHLLTNTM TVSPTDIWKL SDPYIKPQIG DQLSLGLYRN FRGNKVEVSL EGYYKNIRNF
LDYKGGDSLF MNHNIEAAVI NTKAKAYGVE FMIKKMTGKL NGWLGYTYAR TLLRAVDRDS
PDAPNGGNFY PSNYDKPHDF TLISNYRFSH RFSLSFNFTY STGRPYTPPI GKYIIDGAQR
VYYADRNQFR IPDYYRMDLA MNIEGNHRIK KLAHSSWTLA VYNLLGRKNP TSVYFQTVAG
RVNGYQLSIF GQPIPTVTYN FRF
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