| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4287 |
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| Symbol | |
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| ID | 8227890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5195451 |
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| End bp | 5198648 |
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| Gene Length | 3198 bp |
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| Protein Length | 1065 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644932134 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003088654 |
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| Protein GI | 255038033 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.653235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACC AAAACAGACG AAACCCCTTG ATGGGGCTTC GCAGGCCTCT TTTTGCCCTT
TTGGCAGCTG GATGCCTGTC GCCTCAGGAG GTCTGGTCGG AAAAACTCCG CTTTGAACCG
GCCGTGACGT ACCGAAAACC GGTAGACAAA ACCATCACCG GAAAGGTAGT CGACGAGAAG
AACAACCCGC TCCCCGGCGT GAGCGTGGTC GTGAAAGGCA CCACCACCGG AAGCATTACC
GGCACCGACG GTACTTACAC GCTCGATGTC CCCGACAATG CCGTAACACT CGCATTCTCG
TTCATCGGCT ACACCTCGCA GGAAATCACG ATCGGCAACC AGTCCAACAT CCAGGTAACA
TTGCTGCCGA GCAGCGAGGA GCTGACGGAA GTAGTGGTGG TAGGTTACGG AACGCAGTCG
TCCGCCGCGG TGACCGGTGC GGTAAGCAAC ATCCAGGCGC GCGACCTCGT GCGTACGCCA
TCGATCGGAA CGGCCGATGC ATTGGTAGGC CGGGTGCAGG GTATCACCGC CCGGAAAGCC
GATGCGCGCC CCGGAGCAGC CACCACCATC CAGATCCGGA ACATGGGAAC GCCGCTGTTC
GTCATCGACG GCATTCCTTC CGACGCGGCG AGCTTCAACA ACCTTGGCCA GAACGACATC
GAGAGCGTGT CGATCCTGAA AGACGCCTCG GCAGCCATTT ATGGTTTGCG GGCTTCCAAC
GGCGTGGTGC TCGTGACTAC CAAGCGCGGC AAAGCGGGCG ACGGGACGAA GATCAACCTC
TCGGGCTACT ATGGTTTGCA AAACTTCACC CGCTACCCCA AGCCGGCCAA TGCCTACCAG
CACATGCGTG GCCTCGTGGA ATCGGATGTG AACCAGGGCC GGACGCCGTC CATTACACCA
GCTGAACTGG AAAAATGGCG CGTGGGCACA GAAAAGGGCT ATCAGAGCTT TGATTACTAT
GACATGGTCA TGCGCCCCAA CGTGCCGCAG TATTTTGGGA ATGCCAATGT CCAGGGTGGT
ACCGAAAAGA TGAACTACTT CCTGTCGATC GGCCACCTGA ACCAGGACGC ATTGATCCGC
GACTATAACT TTAAACGGAC CAACATCCAG GCCAACCTCG AATCGAGCCT CACGAAGGGC
CTCAAAGTGG GCACGCAGAT CAGCGGCCGT ATCGAAGACC GCTTCCAGGT GGGTGTGCCG
GGGCTTGATG ATTATTTCAA CCCCTTTCTC AGCATTTTCA CCATGTGGCC CACCGAGCGT
CCGTACGCCA ACGACAACCC GGCTTACATT AACCAGACCC ACAACGTGAA CGTGAACCCG
GCGACCTACA AAAAGGACGT GACCGGCTAC ATCGACGAGA TCACCAGGGC CGTAAAAGGC
AACTTCTACG CCGAATATGA TTTCAAATTC GGTCTGAAAG CGAAAGGAAC CTATTCCTAC
GGATTCTCTA ATTTCGACTT CGACGGTTTC GAATATACGT ACGACGCTTA CACCTACGAC
GAAAAGACCG ACACTTACAA CGTAGTGCCC GGCGGCGGTA ACCAAAACCC GTGGCGCGAA
CGTCGCAAGC GTAACATCGT AGACCGCTTC GCCCAGTTGC AGCTGAGCTA TGCGAAAGCA
TTCGGCGACC ACGACATTTC CGCAGTAGCC GCCTACGAGC GTTCCGACAA TGTGAATACT
TACCTCGTGG TGCACACCGT TCCGCCAAAC AACTACATTC CATTAATGTC CTTCGCAAAC
CAGGATTTGC TCATCGACGA ATGGAGCACC GAGGCGCGGG CCGGGTATGT GGGTAGGGTT
AATTATAATT TCAAACAAAA ATACCTGCTC GAACTCGTGG GCCGCTATGA TGGCTCGTTC
CTTTATGCGC CGGGCAAACG CTACGGTTTC TTCCCGGGCG TATCGGCCGG ATGGCGTATT
TCGGAGGAGG ATTTCTTCAA AGGCAAGCTG GAAAATGTGT TCAGCAGCCT GAAACTCCGT
GCCTCGTACG GCCGCACCGG TGCCGACCGT CTCAACAATG CCAACAACGA TTTCGTAGTA
GCGCCATTCA GCTACCTGCC GGGTTACAAC TTCCTGCAAG GCAGCGCGAT TTTCGATGGT
AACTACAACA TCGGCGTGCG CCCGCGCGGT TTGCCGATCA CCACGCTTTC ATGGATTACC
AACATCACGA GCAACATCGG TATCGATTTC GGCTTGCTGG ACGGCCGGTT GTCGGGTCAG
TTTGATATTT TTGAAAGAAA ACGCACCGGA TTGCCTGCGG CGCGTTACGA TGTGCTGCTG
CCGTCGGAAG TGGGCTACTC GCTGCCGAAC GAAAACCTCA ACTCGGACAC GAACCGAGGT
TTGGAAGGTG TTTTGACCTA CAAAAGCAAT GTAGGCCAGG TGGATTACAC ATTGAGCGCC
AACGCAACCT TATCCCGCCG CCGCGACCTG GATTTCTACA AACCGCGTTT CGGAAATTCT
TATAACGAAT ACCGCGACTC GTTTGTGGAC CGCTGGGGAA ATATCAACTG GGGTTACCAG
GTGGTAGGCC AGTTCCAGTC CATGGAGCAG ATCGAGAGCC ATGCGGTGGA TAACGACGGC
CAGGGCAACC GCTCTCACCT TCCCGGCGAC TTCATTTACA AGGATGTGAA TGGCGACGGC
ATTATCAACA ACCTCGACGA ACGTCCGATC GGCTACGCAG AAGGCGCCAA CCCTTACCTG
AGCTTTGCAT TGAACGGAAG CGTTTCTTAC AAAGGCTTCT CGATGTTCTT CGATTTCGCA
GGTGCTTCAT TGCAGAGCTT CCAGCGCAAC TGGGAATTGA AAATCCCTTA CCAAAACAAC
GGTACTTCGC CCAACTACAT GCTCGAAGAC CGCTGGCACC GCGAAGATCC GTTCGATCCG
AACAGCAAAT GGGTGGAAGG TACTTACCCG GCCATTCGCA AGGATAACAC CAGCCACGTG
AACTTCCGCA AAAGCGATTT CTGGATCACC AACGTGCGCT ACATCCGCCT GCGTAACATC
GAGCTCGGTT ACAGCTTCGA TCAGAACATT TCGAAAAAAA TCGGCCTCTC GGCCCTACGC
ATTTATGTAA ATGCCTCTAA CCTCTTCTCA ATCGACAATG TGAAGAAGTA CGGCATCGAC
CCGGAAATTT CATCGGGTAA TGCGCTCGTG TATCCGCAGC AGCGCTTGTT CAATGCAGGT
TTCAACCTCA CTTTTTAA
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| Protein sequence | MNNQNRRNPL MGLRRPLFAL LAAGCLSPQE VWSEKLRFEP AVTYRKPVDK TITGKVVDEK
NNPLPGVSVV VKGTTTGSIT GTDGTYTLDV PDNAVTLAFS FIGYTSQEIT IGNQSNIQVT
LLPSSEELTE VVVVGYGTQS SAAVTGAVSN IQARDLVRTP SIGTADALVG RVQGITARKA
DARPGAATTI QIRNMGTPLF VIDGIPSDAA SFNNLGQNDI ESVSILKDAS AAIYGLRASN
GVVLVTTKRG KAGDGTKINL SGYYGLQNFT RYPKPANAYQ HMRGLVESDV NQGRTPSITP
AELEKWRVGT EKGYQSFDYY DMVMRPNVPQ YFGNANVQGG TEKMNYFLSI GHLNQDALIR
DYNFKRTNIQ ANLESSLTKG LKVGTQISGR IEDRFQVGVP GLDDYFNPFL SIFTMWPTER
PYANDNPAYI NQTHNVNVNP ATYKKDVTGY IDEITRAVKG NFYAEYDFKF GLKAKGTYSY
GFSNFDFDGF EYTYDAYTYD EKTDTYNVVP GGGNQNPWRE RRKRNIVDRF AQLQLSYAKA
FGDHDISAVA AYERSDNVNT YLVVHTVPPN NYIPLMSFAN QDLLIDEWST EARAGYVGRV
NYNFKQKYLL ELVGRYDGSF LYAPGKRYGF FPGVSAGWRI SEEDFFKGKL ENVFSSLKLR
ASYGRTGADR LNNANNDFVV APFSYLPGYN FLQGSAIFDG NYNIGVRPRG LPITTLSWIT
NITSNIGIDF GLLDGRLSGQ FDIFERKRTG LPAARYDVLL PSEVGYSLPN ENLNSDTNRG
LEGVLTYKSN VGQVDYTLSA NATLSRRRDL DFYKPRFGNS YNEYRDSFVD RWGNINWGYQ
VVGQFQSMEQ IESHAVDNDG QGNRSHLPGD FIYKDVNGDG IINNLDERPI GYAEGANPYL
SFALNGSVSY KGFSMFFDFA GASLQSFQRN WELKIPYQNN GTSPNYMLED RWHREDPFDP
NSKWVEGTYP AIRKDNTSHV NFRKSDFWIT NVRYIRLRNI ELGYSFDQNI SKKIGLSALR
IYVNASNLFS IDNVKKYGID PEISSGNALV YPQQRLFNAG FNLTF
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