| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4100 |
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| Symbol | |
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| ID | 8227698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4952492 |
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| End bp | 4954384 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644931943 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003088468 |
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| Protein GI | 255037847 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.975186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCTGC TCGCTTGCCG TGCATTAGCT TGGCCGGTTT ACGCGCAGAC GGATTCCGTG
GCGCTGGAAC CGGTTGTAAT CAAGGGTTTT GTGCCGGAGA AATTCATGAG CGGTCTCAAA
ATCCAGCGCA TCGACTCCGT TCCGCTTGCC CAATTGCGTT TTCAGAACAT CGGCGACATA
TTGTCGGCGT ACACCCCCAT TGCTTTCAGG AATTACGGAC CGGGGCAGCT GAGCACAGCG
TCGTTCCGCG GCACGTCCGC CAACCACACG GCAGTTCTCT GGAACGGGCT GAACATCAAT
GCACCTACCC TTGGACAAAC GGACTTTTCG ACTATCCCAG TGGCTGGTTT CGACCAGCTT
TCGGTCCAGT ATGGCTCGGC AGCGAGCATT GTGGGCTCCG ATGCCGTAGG CGGAAGCATT
TTGCTGGAAA GTAATTCGTC GGTCAGCCCC TTTCAGATTT CGGCGGGCAG GCAGAGGGAA
AGCTTTGACA ATCACCAAAC CCAGGCCGAT GCCCGGTATG CATGGTCGTT GAGCAATCGG
TGGACGTTTT CCGGAAAAAC CGGGATTTAC AACAGCAGGA TGAACAATAA TTATCCGAAA
CCGACCCGAA GGACCTACGC GCTGCTGCCT ACCGAAACTT TTCAGAAAGG CATTGTGCAG
GATTTGTTCC TGCGCTCGCG AAGCGATCAG GAGATCTCGG CACATATATG GCTTACAGAC
AACAAATTAG TCCTTACGCC CGATGACTTG CAAGGTCGTG AAATGACCCG CACCACGGCT
TATCGCACCA TAGTCCGCTA CCGGATGCGG ACGCTCACCT TACGTTCAGC CTGGGTACGC
GATATTATCG ATTATGCCAA AGGCGACATT TCCCGTCCCG ACCATTCGGT AACCGACAAG
TTTGCTTCGA GAGTTGAAAA AGACTTTACG CTAAATATAG GCGAAAATGC AAATCCTGTT
TACCTTAAAA CAGGTGGCGA ATGGACGCAC TACCGCTCGC GCGTGCCGGG CTACTTTCGA
ATGCCCGTAA TCGAAAACCG GACGGATTTT TTCCTGCTCA CCCGCTGGCA ACCCACCTCC
CGGCTCACGA CTTCGATAAA CCTCCGGCAG GGGCTTGTTA CTGGTTTCAA TCCGCCATTC
ACGCCGTCCA TTGGGATGGA ATACAGCCTG GTTCAAAAAA CGCATTACCA TCTTGCATTG
AAAGGCTCCT ATGGCCGCAG CTACCGTGTG CCGACGCTGA ACGAACGCTA CTGGAAAGAT
CTTGGCAATC CTGATGTAAG GCCAGAAACC GGATGGAATA AGGAAGCTGG CCTGGAACAA
ACATTTAAAG CTGCTTTGGG CGGCACGCTG CGCACCTCCG CCACTTTTTA CCATAACCGC
ATCAAAGAGT GGACTTATTG GAATCCGTCG CGCGGCTACC GGGTCGAAAA CCTGCAACAA
GTGCTCGCCC GTGGGATTGA GCTGCAAATG AACTATCAGC GGCAAAACGG ATTCTGGAAA
ACCGGGATCG ATGCGGGTTA TGCATTCAAC AGAAGTAGTC AGGAGAAGGC TTATGATAAT
TATTCGCAGG ACATTGTGGG TAAGCAACTG GTATTTGTGC CAGAGCATAC GGCCAATGCA
AATGCATTTG TACAATACAA GTCCACGAAG CTCACCGGGC AGTTGCAGGC AGCGAGCAAG
CGTTATACCA CATTCGACAA TTCGCAATTC CTGGATGGTT ACGGGCTTGT GAACCTGCTG
GCCGAGACAA GTTTTGCGGT ACAGAAATGC AGGTTCCTCG TGCAGGGACA AATCCGCAAT
GTTACCGACA CGTTTTATTT AAATGTCAGA AATAATGCGA TGCCGGGAAG AAGTTTTGCA
TTAAGTTTAA CTTTTAGTTA CGATTCTCAA TAA
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| Protein sequence | MILLACRALA WPVYAQTDSV ALEPVVIKGF VPEKFMSGLK IQRIDSVPLA QLRFQNIGDI
LSAYTPIAFR NYGPGQLSTA SFRGTSANHT AVLWNGLNIN APTLGQTDFS TIPVAGFDQL
SVQYGSAASI VGSDAVGGSI LLESNSSVSP FQISAGRQRE SFDNHQTQAD ARYAWSLSNR
WTFSGKTGIY NSRMNNNYPK PTRRTYALLP TETFQKGIVQ DLFLRSRSDQ EISAHIWLTD
NKLVLTPDDL QGREMTRTTA YRTIVRYRMR TLTLRSAWVR DIIDYAKGDI SRPDHSVTDK
FASRVEKDFT LNIGENANPV YLKTGGEWTH YRSRVPGYFR MPVIENRTDF FLLTRWQPTS
RLTTSINLRQ GLVTGFNPPF TPSIGMEYSL VQKTHYHLAL KGSYGRSYRV PTLNERYWKD
LGNPDVRPET GWNKEAGLEQ TFKAALGGTL RTSATFYHNR IKEWTYWNPS RGYRVENLQQ
VLARGIELQM NYQRQNGFWK TGIDAGYAFN RSSQEKAYDN YSQDIVGKQL VFVPEHTANA
NAFVQYKSTK LTGQLQAASK RYTTFDNSQF LDGYGLVNLL AETSFAVQKC RFLVQGQIRN
VTDTFYLNVR NNAMPGRSFA LSLTFSYDSQ
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