| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3967 |
|---|
| Symbol | |
|---|
| ID | 8227563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4814334 |
|---|
| End bp | 4817186 |
|---|
| Gene Length | 2853 bp |
|---|
| Protein Length | 950 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644931809 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003088336 |
|---|
| Protein GI | 255037715 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000017261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.368217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAC ACATACGCGC CGGGGAAATC ACTGCCCGAC GGATCAGCCC GGCAGGTTCC
GATCGTCATA CTTACGAGAT CAAACTGACT GCCTATTTCG ATATGCAGAA CGGCGAAGGT
GCCGCAAATG CCCAGAATAG CGTGTTTTTT ACAATCGGCT CCGCATTCGG CGGGCCGGAT
TCGCGCCCTG CCGTACTGGA AGCGCCGCGT ATCCCGCCTA TTCCGAACAT CGGTAACAAC
ACTACCCAGA ACATTTACAT CATCAACTAT ACATTCCCGA CCACGGGTTT GTACCGCATA
TCTTTCGAGG AGGACAACCG GAATAATAAC GTATTGAATA TCGGCCCGCC TCCTACCCAA
AACTTGAACT TCTACGTCAG CACGATCCTG GAAATCAATT CTAGCTACGG ACAAAACCAG
ACCCCCGTGC TGCTGAATGC GCCGATTGAC GTTGCCGCAG TGGGCCAGCG CTACATTCAT
AACCCCGGTG CATTCGATGC TGATGGCGAC AGCCTTGCCT ACCGCCTGTT TATCCCCCAA
AGAAGTGGTG TGAACGGCTC CGGAATTAAC CTGCAATACA AAGACCCGAA CATGGTAACG
CCTCCCGGCC AGACGGAAGC AGGCGGTTCC CCGGCGACTT TCAGTATGGA CCGCGTCACG
GGCGACCTTG TCTGGGACGC ACCGGTTACC AAGGGCTATT ATAATGTGGC CTTCGTCGTC
GAGGAGTGGC GCGACGGCGC GCTGATCGGC CAGATCGTCC GGGATATGCA GATCATCGTC
GAAGATGCCC GAAACGACAG GCCCGTAATC CAGCCGATTC CCGACATATG CGTGGAGGCC
GGGACACTCA TAAACCAGCC CATTACAGCC ACCGATAAGA ATGGCGACAG ACTGACGCTC
ACCTCGACGG GCGGGGTGTA CGAAGCCTCG CTGGTGCCGC CTCCCGTAGC GAAATTTACC
GTTGCCCAGC AGGGCTCACA GGGCACTGTG ACGGGCATGT TCACCTGGCA AACGTCCTGC
GCCCATGTGC GCCTGGAACC ATACGACGTC CTTTTCAAAG TGGAAGACGC CGCCGGGCCG
GGAGTCCCCA ACCCGTCGCT GTTCAGGAAA CTGGTGGATA TGACAACCGT GAACATTAAA
GTTTACGGAC CGAAACCGAC CGGCCTCAGG GGAGTGGCCG TGACGGACCC TACCGGCACA
GCCTACCGCC TCAACTGGGA TGCCTACAAA TGCCAGATCC CCGGGGCTAA AATAGCCATT
TACCGCGCAG AGAAATGTAC CGAACTGCGC GAAGACGTGT GTAGCCCCGG TATTCCGGCG
GGCTCCGGTT ATGAAGAAAT CGGAAGAGTG GATGCCAGCC AAACCACATT CCTCGACAAC
AATGCGGGTG AAGGCCTTCG CCCGGGTGTT TCCTATTCCT ATCGCCTCGT GGCCATGTTC
CCGCGTCCGG GTGCAAGCCC AAGCGACCCA GGTTACCTGA TCGGCGGCGG CGAGAGCCTT
GCTTCGGCGG AGTTCTGCCT TAACCTGCCG ATGGTGATGC CGGTGATTAC GAATGTGACC
GTCGATACCA CCAGCACTAC CAGCGGTGTG ATCACCATCA AATGGACCAG ACCTGCCGCT
TCTGCCGGAT TGCCTGCGCA ATACCGCCTT TTCAGAGCCA CAGGTCAGAA TGGCACCGCA
TTTACACAAA TCGCCGCCAT CAATACCAAC CTCGCAGCAG GCGCACGTGA TACGATTTTC
GTAGACAGGG GCCTGAACAC CGAAGCCAAC GCTTACAACT ACAAGCTTGA ATATTACACC
ACTGTAAACG GACAACTCAC CAAATTCGAC GAAACCGAAA CGGCAAGCTC GGTGCGGCTC
GAACAGGATG CCGCCCAGCC CAACCAGATC GGCCTGAAAT GGACGGCGCT CGTTCCTTGG
GATAACAGCA ACCGTGTTCA CCGGGTGTAC CGCGAGGATA AAGCCAGGCC GGGGACTTTC
AACCGCATTG CCGAAGTATC CGTGCAAGGG CCGCAAACGT TCACTTTCAT CGATGATGGT
ACGGATAAAT ATGCAGCTGA TGGAACGGTC AATGTCACGA TTGTCAGGGA TTCGACTTAT
TGTTATAAGG TAGAAACGGT GGGTTCTTAC AACAACAGCC AGATCAAACC TTCGGTGTTG
TACAACTTCT CGCAGATCCT TTGCATTTCG TCGTCGGATA CGACCAAGCC CTGCCCGCCG
GTGTTGTCCC TCGATCCGCT CAATTGCGAT TCGCTGCGAG CACATCCCGA GGCTTTCTGT
ACGACATCAG GCTTCACAAA CCACCTTTCA TGGGAATATC CTACCGAGGT GGATGGCCGT
GAATGCGACC CGCTCGTGAC CGCCTACCGT GTGTATTATG CAAGATATGA AGGCGATGCC
CCCACGTTGG TTGCGACAAT CACCACGCCG CCGTCGCCCT TGCAGACTTC GTTCGACCAC
GTCGGGCTGA CGTCCTTTGC GGGCTGCTAT TATGTGACCG CCGTGAACCG CTTCGGAAGC
GAAAGCGCAC CGAGCAATGT CGTATGCCGC GACAACTGCC CGATGTATGT GCTGCCGAAT
GTTTTCACGC CAAACGGCGA CTCCAAAAAC GATGTATTCC AGCCTTACGA ATGCCCTGCA
TTTGTTCAGT CGCTCGAATT CAAAGCGTTC AACCGCTGGG GCGCGCAGGT GTTTTCTACC
AAAGACGTGA ACATCAACTG GGACGGTAAA ACCAATGGCG GAAAAGAGCT GGCAGCGGGC
CAGTACTACT ACGAACTGGT CATTTATTTC GAATCTTCCA AAAAGCAAAG CACGCCTGTT
ACCATGAAAG GGTGGGTGCA GCTGCTGAGA TAG
|
|---|
| Protein sequence | MATHIRAGEI TARRISPAGS DRHTYEIKLT AYFDMQNGEG AANAQNSVFF TIGSAFGGPD
SRPAVLEAPR IPPIPNIGNN TTQNIYIINY TFPTTGLYRI SFEEDNRNNN VLNIGPPPTQ
NLNFYVSTIL EINSSYGQNQ TPVLLNAPID VAAVGQRYIH NPGAFDADGD SLAYRLFIPQ
RSGVNGSGIN LQYKDPNMVT PPGQTEAGGS PATFSMDRVT GDLVWDAPVT KGYYNVAFVV
EEWRDGALIG QIVRDMQIIV EDARNDRPVI QPIPDICVEA GTLINQPITA TDKNGDRLTL
TSTGGVYEAS LVPPPVAKFT VAQQGSQGTV TGMFTWQTSC AHVRLEPYDV LFKVEDAAGP
GVPNPSLFRK LVDMTTVNIK VYGPKPTGLR GVAVTDPTGT AYRLNWDAYK CQIPGAKIAI
YRAEKCTELR EDVCSPGIPA GSGYEEIGRV DASQTTFLDN NAGEGLRPGV SYSYRLVAMF
PRPGASPSDP GYLIGGGESL ASAEFCLNLP MVMPVITNVT VDTTSTTSGV ITIKWTRPAA
SAGLPAQYRL FRATGQNGTA FTQIAAINTN LAAGARDTIF VDRGLNTEAN AYNYKLEYYT
TVNGQLTKFD ETETASSVRL EQDAAQPNQI GLKWTALVPW DNSNRVHRVY REDKARPGTF
NRIAEVSVQG PQTFTFIDDG TDKYAADGTV NVTIVRDSTY CYKVETVGSY NNSQIKPSVL
YNFSQILCIS SSDTTKPCPP VLSLDPLNCD SLRAHPEAFC TTSGFTNHLS WEYPTEVDGR
ECDPLVTAYR VYYARYEGDA PTLVATITTP PSPLQTSFDH VGLTSFAGCY YVTAVNRFGS
ESAPSNVVCR DNCPMYVLPN VFTPNGDSKN DVFQPYECPA FVQSLEFKAF NRWGAQVFST
KDVNINWDGK TNGGKELAAG QYYYELVIYF ESSKKQSTPV TMKGWVQLLR
|
|---|
| |