| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3921 |
|---|
| Symbol | |
|---|
| ID | 8227516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4767714 |
|---|
| End bp | 4769417 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644931762 |
|---|
| Product | carboxyl-terminal protease |
|---|
| Protein accession | YP_003088290 |
|---|
| Protein GI | 255037669 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCAG AAAGACCTCA GCCCCCGATC CAGAACTCGA AATCCGTAGT TCGCTTGCCT
ATTATCATCG CGATCACGCT GGCGGCGGGA GTGCTGCTGG GGAGCACGTT TTTCAGCGGA
GGTAAAAAAC TGTCCGATGT TGCCAAAGGG TACAGCAAAT TCAGGGAAGT ATTAATGCTC
GTCGAAAACA ACTATGTCGA TTCGGTCAAT ACCGAGGAAC TGGTGGATTT CTCGATCTCC
AAAATGCTCG AAAAGCTTGA TCCGCATACG GCCTATTTCA ATTCCGAGGA AGCTACCGCG
GCACGCTCGC AGCTCGAATC GGGATTTGAC GGCATCGGGG TCGAATTCAA TATTTACAAC
GACACGGTTT ACGTGGTAAC GCCATTGAGC GGAGGTCCGT CGGAGGCTGC CGGTATCCAG
AGTGGCGATC GCATTATTTC AGTGAATAAA GAAAACCTGT CGGGTCCGGG CGTTAGCAAT
GCGCAGGTTT ACAAGCTCTT GCGTGGCAAA CGCGGAACAA AAGTGGACCT GGCCATTGAA
AGGGTGGGCC TGAACGACAA AATGAATTTC TCGGTAGTTC GCGACCGTAT TCCCACTTAT
TCGGTGGATG CGGCCTATAT GGTGGATCAG GAAATCGGTT ATATCAAGGT GAGCCGTTTT
TCCGAAACCA CTTACGACGA GTTTAAATCG GCATTGAAAA CATTGAAAGC GGATGGTTTG
AAAAACCTCA TTCTCGACCT CCGCGGCAAT CCGGGTGGTT ATATGGAACG CGCCACAAGC
ATGGCCGACG AGTTTATTTC CGGCGATAAG CTGCTGGTTT ACACTGAAGG AAAAGACAGC
CGGTTCGATC GCAAAACGCG TTCGCACGTG GCAGGCATGT TCGAGCAGGG CCCGCTGATC
GTGCTCGTGG ACGAAGGCAG CGCCTCAGCT TCCGAAATCC TCGCGGGTGC ATTGCAGGAT
CACGACCGCG CGCTGGTGGT GGGAAGAAGG TCTTATGGAA AAGGTTTGGT ACAAATGCCG
ATCAAACTAT CGGACGGCTC GGAGCTGCGC CTTACCATCT CGCGCTACTT CACACCGAGC
GGCCGCAGCA TCCAGAAACC TTACGAGCTC GGCAAGGGCG AAGATTACAG CCAGGACCTC
ACGCACCGGT ACGAAAGCGG AGAGCTGTTT AACGTAGACA GCATTAAATT CGATAAAAGC
AAGGTATACA AAACCGATGG CGGCCGTATC GTGTACGGCG GCGGAGGCAT TACACCGGAT
ATTTTCGTGC CGAAAGACAC ATTGCTCAAC AGCAAATATC TTTTTGAATT GTATTCCAAA
AACATCATCC GCGAATATGC ATTGCGGTAT GCCAATGAAA ACCAGAGAAA ACTGGAAAAA
CTGCCGTTTA AAGAGTTCCT GAAAACGTTC GAAGTGAGCG ACGCCATGGT GGTCGAGCTG
GTGAAAGACG CGTCCAAAGC GGGAATTAAA CCGAACGAGA AGGAACTGAA CCTTTCAAGA
CCGCTCATTA CCTCGCAAAC GAAGGCGATC ATCGGTCGTT ACGTGTGGGG CAGAAAGCAG
AAAAGCGGGC TGAATAACGA AGTGTTCCAG GTGCTGAACC CGACCGACAA TGTGTATCAG
CACGCGGTAC AGCTTTTCAG CCAGGCGGCG CAGTTGGAAA AAGGCGAATT CAGCAGTCTT
AATATTCCCA AAAACAAAAA GTAA
|
|---|
| Protein sequence | MNSERPQPPI QNSKSVVRLP IIIAITLAAG VLLGSTFFSG GKKLSDVAKG YSKFREVLML
VENNYVDSVN TEELVDFSIS KMLEKLDPHT AYFNSEEATA ARSQLESGFD GIGVEFNIYN
DTVYVVTPLS GGPSEAAGIQ SGDRIISVNK ENLSGPGVSN AQVYKLLRGK RGTKVDLAIE
RVGLNDKMNF SVVRDRIPTY SVDAAYMVDQ EIGYIKVSRF SETTYDEFKS ALKTLKADGL
KNLILDLRGN PGGYMERATS MADEFISGDK LLVYTEGKDS RFDRKTRSHV AGMFEQGPLI
VLVDEGSASA SEILAGALQD HDRALVVGRR SYGKGLVQMP IKLSDGSELR LTISRYFTPS
GRSIQKPYEL GKGEDYSQDL THRYESGELF NVDSIKFDKS KVYKTDGGRI VYGGGGITPD
IFVPKDTLLN SKYLFELYSK NIIREYALRY ANENQRKLEK LPFKEFLKTF EVSDAMVVEL
VKDASKAGIK PNEKELNLSR PLITSQTKAI IGRYVWGRKQ KSGLNNEVFQ VLNPTDNVYQ
HAVQLFSQAA QLEKGEFSSL NIPKNKK
|
|---|
| |