| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3798 |
|---|
| Symbol | |
|---|
| ID | 8227387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4623179 |
|---|
| End bp | 4623982 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644931633 |
|---|
| Product | tryptophan synthase, alpha subunit |
|---|
| Protein accession | YP_003088167 |
|---|
| Protein GI | 255037546 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA TTATAAATCT TTTTCAGAAC TCTAATACCG ACGGCAGCGG GTTACTGAAC
GTGTATTTCA CGGCCGGTTT TCCCGAGCTG AACGATACCC GGCGCGTGTT GCAGGCATTG
CAGGATGGCG GCGCGGACCT CGTGGAAATC GGAATGCCTT ATTCCGATCC CGTGGCCGAC
GGCGAGACGA TCCAGCAAAG CAATGACCGC GCATTGGAGA ATGGCATGTC CGTTCGCGTG
CTTTTCGATC AGTTGCAGGG CATGCGCGAG ACGATCACCG TGCCGGTGCT GCTCATGGGT
TATATCAACC CGGTGTTGCA ATATGGCATC GAGGCGTTTT GTGCTAAATG CGCGGAGGTT
GGCGTGGACG GGCTCATCCT GCCCGATATG CCGATGGATG TGTATTTGGA TGAGTACAAA
TCGATCTTCG ACGCGCACGG CTTGCTCAAT ATCTTTCTGG TGACGCCGCA AACTTCCGAG
AAACGCATCC GCCAGATCGA TGAGGTGAGC GAAGGGTTCA TCTACACTGT TTCCTCAGCA
AGCGTTACCG GGTCCAAGTC GGGCGTGAGC GGGGATATGC AGTCGTATTT CGAAAGACTC
GATGCGATGA ACCTCCGCAA TCCGCGGCTG ATCGGCTTTG GTATCAAAGA CCACGACACG
TTCGTGAAGG CTTCGAGCCA CGCCGCCGGC GCGATCATCG GCAGCGCGTT CATCCGCGTG
TTGCAGGAAA GTACCGACCT TGAAAATGAC ATCAAAACTT TCGTAAGGGA CGTAAAACGC
TCATCCGAGC CGATTCCGGC CTAA
|
|---|
| Protein sequence | MNRIINLFQN SNTDGSGLLN VYFTAGFPEL NDTRRVLQAL QDGGADLVEI GMPYSDPVAD
GETIQQSNDR ALENGMSVRV LFDQLQGMRE TITVPVLLMG YINPVLQYGI EAFCAKCAEV
GVDGLILPDM PMDVYLDEYK SIFDAHGLLN IFLVTPQTSE KRIRQIDEVS EGFIYTVSSA
SVTGSKSGVS GDMQSYFERL DAMNLRNPRL IGFGIKDHDT FVKASSHAAG AIIGSAFIRV
LQESTDLEND IKTFVRDVKR SSEPIPA
|
|---|
| |