| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3720 |
|---|
| Symbol | |
|---|
| ID | 8227305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4528793 |
|---|
| End bp | 4529917 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644931552 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_003088090 |
|---|
| Protein GI | 255037469 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.626306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.408951 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTG TCGTTTCGTC ATCAGTTCTA CTCAAACAGC TGTCAGCTAT AAACGGTGTC
GTTTCAACGA ACCCAATTGT GCCAATCCTC GAAAATTTCC TGCTCACGCT CGACGGAAAT
TCTCTCACCG TGACCGCATC CGATCTTCAA ACCGTCATGA TTACGGAAAT TGAAGTGGAA
TCATCCGAAA AAGGAGCTAT TGCCATTCCA GCAAAGTTGC TGCTCGACAC CCTCCGCGGC
CTGCCCGAGC AACCCATTAC CTTGCAGGTG AATGCCGAAA CATTTGGTAC CGAAATTATT
TCCGATAACG GCCGCTATAA ACTGTCGGGC GAAAACCCGA TCGATTTCCC GAAAACGCCG
GTTGTGAACC GCGGCCAGTC CGTGGATTTC TCGTCGGTTG CATTGGGTTC GGCTATTTCC
AACACATTGT TTGCAACCAG CACCGACGAT CTTCGCCCGG CTATGACGGG GGTTTTCGTG
CAAATGGGGG CTGAAAGCGC TACTTTCGTG GCAACCGATG GTCACCGCCT CGTTCGCTAC
CGCCGTACCG ACATTAAATC GGACATTGAC ACGTCGATGA TCATCCAGCG AAAAGCATTG
AACCTGCTGA AAAGCTGCCT GCCATCGGAA GATGTACCCG TAAAAGCGGA ATTCACTTCT
TCCAATGCAT TTTTCAGCTT CGGAAACATC CGCATGATCT GCCGGCTGAT CGACGAGCGC
TTCCCGGATT ACGAGAACGC AATCCCGACC AACAATCCGA ACACGCTCAC CATTAATCGT
CTCGAAATAC TCAGCTCCCT GCGCCGTATT TCGATCTACT CCAACCGGAC TACCCACCAG
GTGCGCATGA AAATGGCGCT GAATGACCTG GTCATTTCCG CGGAAGATCT CGATTATTCT
AACGAAGCCA ACGAGCGCCT GATGTGCGAA TACAATGGAG ACGATATGGA AATCGGTTTC
AATGCGAAGT TTCTCATCGA AGTATTGGGT AATCTTTCGA GCAAAACCAT CACTTTCGAA
CTTTCCGCTC CAAACCGCGC CGGATTGATT ATTCCCGTAG ATCAGGAGGA AAATGAAGAC
ATTCTGATGC TGGTCATGCC AGTTATGCTG AATACCTACG TTTAG
|
|---|
| Protein sequence | MKFVVSSSVL LKQLSAINGV VSTNPIVPIL ENFLLTLDGN SLTVTASDLQ TVMITEIEVE
SSEKGAIAIP AKLLLDTLRG LPEQPITLQV NAETFGTEII SDNGRYKLSG ENPIDFPKTP
VVNRGQSVDF SSVALGSAIS NTLFATSTDD LRPAMTGVFV QMGAESATFV ATDGHRLVRY
RRTDIKSDID TSMIIQRKAL NLLKSCLPSE DVPVKAEFTS SNAFFSFGNI RMICRLIDER
FPDYENAIPT NNPNTLTINR LEILSSLRRI SIYSNRTTHQ VRMKMALNDL VISAEDLDYS
NEANERLMCE YNGDDMEIGF NAKFLIEVLG NLSSKTITFE LSAPNRAGLI IPVDQEENED
ILMLVMPVML NTYV
|
|---|
| |