| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3550 |
|---|
| Symbol | |
|---|
| ID | 8227135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4340649 |
|---|
| End bp | 4343537 |
|---|
| Gene Length | 2889 bp |
|---|
| Protein Length | 962 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644931385 |
|---|
| Product | Dystroglycan-type cadherin domain protein |
|---|
| Protein accession | YP_003087923 |
|---|
| Protein GI | 255037302 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAATT CTACGTGTGC GATTAAATTT TTGACCCGAT TTTCGTTGTT GCTCGCCGTG
CTGGCGGTCG GCGGGAACGT TTCAGCGCAG AGCCAGCCGA GAACGACGGA AATCGATACG
CAGCGCTACC TCGCGCTGAT GCTCCTGAAC CTCACTACGC CGGACGAGGC TAGTCCGGAG
CTGGACCTGA TCCGCTCAGC AAAGGATTAC GGGCTCAATG CCGTTTATAT CACAGTCCCC
TGGGATAAAG TATATTTCCA CGCACCTACC GACACGCCGC TCTGGGGCAA GTTCGACCAG
CAGATCAAAC TCGCCACGGA CCTGGGCATG AAAGTCGCGC TCCGCATTCA CCTGGGGCGG
CATAGCACGC GTATCAAGGG GTTTTGGGAA GTGTCCGACA GCCAGTTCAG CCATTCCAAC
AAACCTTTGC TCAGCGGTTA CCAGGATACG GCCTTTGGTT TTGATAATCA GCCGATTGTC
GATAAGGGAG CTGCATTTGT AAAAGAAGTG ATCAACCGCT ACAAACATTT ACAAACTGAA
AAAAAGCTGC TTTATGTGTC GGTAACTACT ACCGGTACGC AAGAGGGCGA ATATCCTGGC
GGGCTGATCG AGAATGGCAA GGAAAGTTCA GCCGTTTACG ATTACTCGCC ATCTATGGTG
AAGGGTTTCA AGGAGTTTGT TAAAAGCAAA TACAAGAAGA TCGAGCGGAT TAATTTTCTC
TGGGGAATGA CTTTCAAGTC GTTCGACGAG GCCAATCCGC CGGCAACTGC CTGGGAGCCT
CACCTTTCTT TCCGCCAGCG ATATGGAAAA GATTGGTACA TCTACCGTCA TATGATGCTC
AAAAGGTTCA CGGAGCAAAT GGTGACCGCT ATCAAAAGTG TTGACCCTAC CATTAAATAC
GTATCCGATT ACGGCTCCGT ATTCGATTCG CAATCGGCCT CGCGGGGGAC ATTGGGTTTC
AGGGATTTGA ATGAAAAAAC GGACGGGATC AAGATCAACG ACAACCTCGC CACGCATGAT
CACCGGTGGT CGGTGGATAT CCTGAAAAGC GATGCACCTC CGGGTTTTAT CACGGCTAAT
GAGCTGTTTG TCAGCTCCTA CCTGGATAAC AATGCCCACA TGAAGCAAAT CAACGAAAAC
TTCGAACACG GGGCTAACGT GGTGGCTGTG GTGGTATCGC AAAAGGACCA GATGGCCCGT
GCGGAAGGTT TTCTGAGGCA AGGTGCAACC GTGTGGCTCA CCAAACCAAT GACACCGATC
GTGTATGCCG ACTCGGTTTC GTACCGCTTG TCGGCGGCTA CCGAGAAGGG CGGTGCCCAG
GGCGTGATTT ACGACGAATG GGCGAAACGC GCCTACGCCG ACCCGGCTAA ACCACGTCCG
ATCCGCATCC GGCTGGTCGA GGACATTTTG TCGCCAAGCT ACTGGGACGA CGCATCCAAC
TATGTGCCCT ACGTATTCAG GCCGGTGCCG ATGCAGATCA TCCCTGTGAA CAAGGATTTC
GAATACAGGC TGCCGATTGA CACGTTTTCG GATGTCGATG GAAAGATCGT CCGTATGGAA
GTGGGCGCTT TGCCGGCCTG GCTAAGATAT GAGAACGGCA TTTTGCGCGG AAGGCCCACC
ACGCTCGGCG ATTACCGCAT TGCGGTGAAA GGCATCGACG ATGAGGACGG CTCGGCGGAG
GCGTTTTTCA CCATTCGCGT GGATACCCGC GAGAATGCCA ACAAGCCGCC GACCGTGGAC
AGCAACTTCT CAAACCAGAT GGTGGCTGTG AACAAACCTT TTACCATCAC CATTCCCAAA
ACGGCCTTCG TAGACCCCGA CGGCGAGATC ACGAAAGTAG AGGCCAGCGG GCTTCCGGCC
TGGCTTTCGT TTTCGAACGG TGTACTAAGC GGCACGCCGT CCACATTGGG CGATTACCGC
ATTATCCTCA AAGCCTACGA CGATCTGAAT GCGTTTGTGG AAACCTATTT TACCATCAAA
GTGGTAGAGC CGCAGTTCCT GAACGCACCG CCGTTCGCGA CCAGCACATT GCCTGTCAAA
TATGCGCAGA TCAACATGCC GTTCAACTAC ATCCTGCCCG CCAACATCTT CGGCGATCCT
GACGGCTACA TTTCGTCGAT TACCGTGCAA AACAGGCCGT CATGGCTCAA TTTTGCATTG
AATGAATTTT CCGGAACGCC TACGGAAGAA GGCGAGTACC GCTTGATCAT CCGCGCTTAT
GACAATGCGG GCGCCTACGT CGAAATTCCT TTGATATTGC TTGTGCAAAT TCCCGAAATC
CGCTTTGAAC TTGTCCAGGC CGGCAGCAAA GTCGACCAGC GTGTGATCCG GAAGCTTTCG
GGCGATGACG TGATCCCTTA CGATTCGCTG CCGCCATCGC TGAATATGTA CGCTTACGGA
AACTTTGAGT ACGACAAAGT CACGTTCGAT CTGAACGGCC CGTATCGCAG GAAATCTACA
ACGGCCATTT TCCCATATGC CATGTATGAG GATGCATCCG GTTTCGCACC GTATGTAGGC
CGCTATACTT TGACGGTCAC GGCATTCAAG GAAGATTCGG CGGTGGTCAC GAATTCCATT
GAATTCGGAA TTTCAGCAGG CGACAAGTCC GATATCACGA AAGACATGGA AAACTGGGCA
TTTTATCCCA ACCCGGTGGA AAGCATCATG AATATCAAAC TTCCCGAATA TAAGCCGGAG
GATAATCTCA CCTGGGAAAT CGTGACGGTG GCTGGCAAGC GCATACCGCT TGTAAGCTCA
CAGATCAAAA TATCGGATAG CCTGGCGAAT GTGGACCTGG ACGCCATCGG CCTTTCCTCG
GGGATCTATT TCATCAGGGT CGAGAATAAC GGCGAGTTTT TGAAGCAGTT CCGCATTTTC
AAGAAGTAG
|
|---|
| Protein sequence | MLNSTCAIKF LTRFSLLLAV LAVGGNVSAQ SQPRTTEIDT QRYLALMLLN LTTPDEASPE
LDLIRSAKDY GLNAVYITVP WDKVYFHAPT DTPLWGKFDQ QIKLATDLGM KVALRIHLGR
HSTRIKGFWE VSDSQFSHSN KPLLSGYQDT AFGFDNQPIV DKGAAFVKEV INRYKHLQTE
KKLLYVSVTT TGTQEGEYPG GLIENGKESS AVYDYSPSMV KGFKEFVKSK YKKIERINFL
WGMTFKSFDE ANPPATAWEP HLSFRQRYGK DWYIYRHMML KRFTEQMVTA IKSVDPTIKY
VSDYGSVFDS QSASRGTLGF RDLNEKTDGI KINDNLATHD HRWSVDILKS DAPPGFITAN
ELFVSSYLDN NAHMKQINEN FEHGANVVAV VVSQKDQMAR AEGFLRQGAT VWLTKPMTPI
VYADSVSYRL SAATEKGGAQ GVIYDEWAKR AYADPAKPRP IRIRLVEDIL SPSYWDDASN
YVPYVFRPVP MQIIPVNKDF EYRLPIDTFS DVDGKIVRME VGALPAWLRY ENGILRGRPT
TLGDYRIAVK GIDDEDGSAE AFFTIRVDTR ENANKPPTVD SNFSNQMVAV NKPFTITIPK
TAFVDPDGEI TKVEASGLPA WLSFSNGVLS GTPSTLGDYR IILKAYDDLN AFVETYFTIK
VVEPQFLNAP PFATSTLPVK YAQINMPFNY ILPANIFGDP DGYISSITVQ NRPSWLNFAL
NEFSGTPTEE GEYRLIIRAY DNAGAYVEIP LILLVQIPEI RFELVQAGSK VDQRVIRKLS
GDDVIPYDSL PPSLNMYAYG NFEYDKVTFD LNGPYRRKST TAIFPYAMYE DASGFAPYVG
RYTLTVTAFK EDSAVVTNSI EFGISAGDKS DITKDMENWA FYPNPVESIM NIKLPEYKPE
DNLTWEIVTV AGKRIPLVSS QIKISDSLAN VDLDAIGLSS GIYFIRVENN GEFLKQFRIF
KK
|
|---|
| |