| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3315 |
|---|
| Symbol | |
|---|
| ID | 8226893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4060155 |
|---|
| End bp | 4062107 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644931146 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003087691 |
|---|
| Protein GI | 255037070 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAC ATTACCTCAG CATCACCTTC TTTCTGTCTT GCATTGCGAG CCCCGGCCTC
GCGCAGGAAA TATCGCTCGA CCCTGTTACC GTCACCTCGT CGCTCGTCGA AAAGCGCGCC
TCGCAGACCG GCCGCAACAT TGCCGTCATC AAAGGCGAAT ACTTTCAGCA ACTGCCCGTC
CACAGCATCG ACGACCTGCT CCGCTACGTG CCGGGCGTGG AAATCCAGGC GCGCGGCCCG
CAAGGTTCGC AGAGTGACAT TGTGCTGCGC GGCGGCACGT TCCAGCAGGT GCTTGTGATC
CTCGACGGCA TTCGCCTGAA CGACCCGAAC ACAGGCCATT TTAATAGCTA CATTCCCATC
TCCCCGGCCG AAATCGACCG GATCGAGGTT TTGAAAGGCG CTTCATCCGC ATTGTACGGT
TCCGATGCCG TCGGCGGGGT TGTTCATGTT ATTTCAAAGA CATTTGCGGC GCGGCTTGCC
GGCGCAGGAA CGGATAATGC TGTACAAAAA ACGCAAGTTA ACGGCGGCGT GAGCGCTGGG
GAATATGGGC TGTTTAATGC CAATGTGGGC GCATTTGTAC AGCGGAACAA GCTGGCGGTT
TCCGGAGGAT TTTTGTCCAA CAATGCCTCA GGCGTGCAGC AGCGGGGCAT TAAGGGCTAT
TTTCACAATA ATACGGCCTC ATTATCGCTG AGCTACGCGA TTTCTCCGAG CTGGAACCTA
TCCATCCGCA GTGCCTACGA CCACCGCGAT TTTGCCGCGC AGAACTTTTA CACCGTGCTC
AAATCCGACA CCGCGAGCGA AAAAGTGAAA ATGTCGTGGA ACCAGGTGCG GCTGAGTTAC
CAGAAAAACA AGACGGCATT TTCGGTAGAC GGTGGATTTA AATCGGTGCA GGACACCTAT
TTGTTCAACC CGCATTCCAT TGCCAACAGC AGTAAATCGA AGCTCTGGCA GGGGCTGGCT
ACTTTGCAGC AGGGCCTCAC CGCCAGCACG AACCTGATCG CCGGCGTCAA CTTTCAGCAG
CGTAATATCC GGTCCAACGA CCGCGGCAAT CACACATTGA ACCAGCTCGC ACCATTCGTT
TCGGTGGTAC AAACGATCGG GGAGCATTTT ACAGTGACAC CTTCCGCCCG CCTGGATTGG
CGCGAAAACA TTGGCACCGA AGTTTCGCCC CAAATCAATT TATCCTACAA AAAATCGAAC
TGGCAGCTGC GGGCGAGTGC AGGAAAAACC ATTCGCGACG CCGATTTCAC GGAACGGTTT
AACAACTACG CCAAAACGCT CGTCACCGGC GGCAGCGTCG GCAACCCCGA CCTGAAAGCC
GAGCGCTCGA TCAGCTACGA AGCCGGCGCC GACTGGTTCC TGACCAGCAA CCCGACGGCT
CAGCTCAAAA TTTCAGGCAC GTTTTTCCAG CGCCTTCAAA AAGACCTGAT CGACTACGTC
ACCACACCAT ATGCACAAAT GCCCCGCAAG GATAACCTCT CGCCAACTGG CACATTCGGC
CTTGCATTGA ACATCGCCGA AGTAAACACG ACCGGCTTTG AGCTCGATAT TCAATCGGCC
AATGCGATTT CGGATAATCA GAAACTGCTC CTCAACGCAG GCCTTACCTG GCTCGATAGC
GACAATAAAA GCAATATCCA GTCTTTCTAC CTCTCGTCAC ACGCCCGTTT CCTTGCCAAT
TTCTCGGCCA TTTACCAGGT CGGCGCATTC TCAGTGAGTG TGAATGGTTT GTACAAAAAA
CGGGCAGAAC GGGAAGCATC GGCCATCGAA GCCACGATTT CTAAAAACTA CTTTTTGCTG
AATGCACGCG CCGAATATGC GTTTCTGAAA CGTCAGCTGG GTGTGTTCGT GCAGGCCGAT
AATGCATTCG ACAAGCAATA CAGCGATGTG CTCGGCTCGG TAATGCCCGG TCGCTGGTTG
ATGGGCGGCG TTCGTTTCAG CTTTTCAAAA TAG
|
|---|
| Protein sequence | MKLHYLSITF FLSCIASPGL AQEISLDPVT VTSSLVEKRA SQTGRNIAVI KGEYFQQLPV
HSIDDLLRYV PGVEIQARGP QGSQSDIVLR GGTFQQVLVI LDGIRLNDPN TGHFNSYIPI
SPAEIDRIEV LKGASSALYG SDAVGGVVHV ISKTFAARLA GAGTDNAVQK TQVNGGVSAG
EYGLFNANVG AFVQRNKLAV SGGFLSNNAS GVQQRGIKGY FHNNTASLSL SYAISPSWNL
SIRSAYDHRD FAAQNFYTVL KSDTASEKVK MSWNQVRLSY QKNKTAFSVD GGFKSVQDTY
LFNPHSIANS SKSKLWQGLA TLQQGLTAST NLIAGVNFQQ RNIRSNDRGN HTLNQLAPFV
SVVQTIGEHF TVTPSARLDW RENIGTEVSP QINLSYKKSN WQLRASAGKT IRDADFTERF
NNYAKTLVTG GSVGNPDLKA ERSISYEAGA DWFLTSNPTA QLKISGTFFQ RLQKDLIDYV
TTPYAQMPRK DNLSPTGTFG LALNIAEVNT TGFELDIQSA NAISDNQKLL LNAGLTWLDS
DNKSNIQSFY LSSHARFLAN FSAIYQVGAF SVSVNGLYKK RAEREASAIE ATISKNYFLL
NARAEYAFLK RQLGVFVQAD NAFDKQYSDV LGSVMPGRWL MGGVRFSFSK
|
|---|
| |