| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3159 |
|---|
| Symbol | |
|---|
| ID | 8226734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3863560 |
|---|
| End bp | 3864897 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644930989 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003087537 |
|---|
| Protein GI | 255036916 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC AGGCCGGCGC CCAGCAGCTC CGACTGCACG AGGCATTGGA GCAGGGCAAA
GGCAATTTCC CGTTCCTCAA AGCCAAGCGT GCCGAAATCC ACAGTGCGGA AAGCCGCATC
AAATCCGTTA AAACCGACTA TCTGCCCGCA TTCATCGTGC AGGATCAATA TACTTACGCC
ACCAGCAACA GCGTGGCCGG CGCATTTCTG CCCAACGAGG GCAGCGCATT GTCGCCCTCC
GGCGGCATTC GCCCCGAAAA CCATTACACC CCCACATTCG GCAGCTTCAC CACGGCGATG
GTCGACTGGA AAGTGTTCAA TTTCGGAAAA GTGAAAGCCC AGGTCAACGC TGCCAAAGCC
GATCTCGCCC GCAGCCAGGC CGACTATGAG AATGAGCTTT TCCAGCATCA GGTTAAGATC
ATCGATGCCT ACCTGCTGTT GCTGATCAAC CAGAAACTGG TGGACGCGCA GCGCCAGAAC
CTCGAACGGG CATCGATTTT CAAGCGTGTT ACCGACGCAG CCGTGAGCTC GGGAATGCGC
CCGGGCGTGG ACAGTTCCCT GGCCGCTGCG GAATATGCCA AAGCGCAATT GCTGCTGCTG
GAAAGCCAGC GGTCGGAAAA AGCGCAGCGA CTGCGGTTTT CGGAGCTTAC CGGCGAGCTG
CGCGACAGTG TCCAGGTGGA TATCATGGGT TTTTACTCCC AATTGCCGAT TGTGCCGGGC
GAAGCGACTT CATTGCTCAA AAACCCTGCA TTGCGGTTTG CGCAGGCACA GATGGACGCC
TCGCTGGCAC GTAGCCTGGC CGTGAAACGG TCCTTTTTAC CCTCGATTTC CCTCGTAGGC
GCCGGTTGGG GCCGCGGGTC GGGCATTTCC AACAAGGACG ACTCTTTCCA CACCGATTTT
TCGAGCGGTG TCAAATACCA GGTCTTCAAC TACCTGGTCG GCGTTTCCAC GCGCTGGAAC
CTGACCGGCA TCCTGAAAGT AAGGAACGAC TACCACGCCG AACAATTCCA GGTGGAGCGT
TTCAAATCGC TGTACCAAAC CCAGCAATTA CAACTCGACC GCCAGGAGCG CGAATCCGAA
ATCCAGTTCC AGCTATCGCT CGCGCAAGCG CGCCTCACGC CGGTGCAACT CGCAGCCGCC
CGCACGGCTT TCAACCAGGC CGAGGCGCGC TACCAGAGCG GCATGACCGA CCTGTTTACA
TTGGCCCAAA GTGTGAATGC ATTGAACCGC GCCGAAGTGG ACAAGTTTGT CACCACCGGC
AACGCCTGGC GCTCGCTGCT GCTGAAAGCC GCCGCAGCCG GCGACCTCGA CATTTTTTTG
AGCCAGATAA ACCAATAA
|
|---|
| Protein sequence | MSAQAGAQQL RLHEALEQGK GNFPFLKAKR AEIHSAESRI KSVKTDYLPA FIVQDQYTYA
TSNSVAGAFL PNEGSALSPS GGIRPENHYT PTFGSFTTAM VDWKVFNFGK VKAQVNAAKA
DLARSQADYE NELFQHQVKI IDAYLLLLIN QKLVDAQRQN LERASIFKRV TDAAVSSGMR
PGVDSSLAAA EYAKAQLLLL ESQRSEKAQR LRFSELTGEL RDSVQVDIMG FYSQLPIVPG
EATSLLKNPA LRFAQAQMDA SLARSLAVKR SFLPSISLVG AGWGRGSGIS NKDDSFHTDF
SSGVKYQVFN YLVGVSTRWN LTGILKVRND YHAEQFQVER FKSLYQTQQL QLDRQERESE
IQFQLSLAQA RLTPVQLAAA RTAFNQAEAR YQSGMTDLFT LAQSVNALNR AEVDKFVTTG
NAWRSLLLKA AAAGDLDIFL SQINQ
|
|---|
| |