| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3060 |
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| Symbol | |
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| ID | 8226634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 3739747 |
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| End bp | 3742830 |
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| Gene Length | 3084 bp |
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| Protein Length | 1027 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644930891 |
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| Product | membrane-bound dehydrogenase domain protein |
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| Protein accession | YP_003087440 |
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| Protein GI | 255036819 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | [TIGR02603] putative heme-binding domain, Pirellula/Verrucomicrobium type
[TIGR02604] putative membrane-bound dehydrogenase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.329582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.577758 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCA AAAAATCGAT ACTCCTCTTT CCCGCCGGCT GCCTGCTTGC CGGACTGATG
GTGGCTTCCT ACCAGCGTTC CAACCCGAGC ACCATCGATG CCGCCCGGGC CGACACGCTT
TATAAAGATC TTACTGATGC TCAGAAGCGT TCGTCGCGCT ACGCCGTGGC CGGTCTCACC
GTGACCAACG GATTGGAAGC GACCCTTTTT GCATCCGAAC CGACGATCAC CAATCCAACG
AATATCGACG TCGACCATTT GGGGAGAGTC TGGGTTTGCG AAGCCTACAA TTATCGTCCG
GCCATCAACG GCAATCCAAC CAAAAATGAA GGCGACCGCA TTGTGGTGCT GGAAGATACC
AACGGCGACG GCAAATCCGA TAAATCAACG GTTTTTTATC AGGGTTCCGA GATCAATGCG
CCGCTGGGCG TTTGGGTGAT GGGCAACAAG GTGATCGTTT CGCAAAGTCC TTATGTGTGG
CTGTTCACGG ACGAGGATGG CGATTTGAAA GCAGATAAAA AAGAGGTCAT TTTCGAAGGC
ATAGGCGGTG ACCAGCACGA CCACGGAATG CACGCGTTTG TTTTCGGGCC GGATGGTAAG
TTGTATTTCA ATTTCGGAAA TGAAGGCAAC CACCTGCTCG ATGGAAAGGG AAATCCTATT
GTGGGCAAAG ACGGCAAGCC GATCGACTTT TCTAAACTGA AACAGGGAAT GGTGTTCCGC
TGCGACCCTG ATTTTAACAA TATCGAGGTG CTGGGCAATA ATTTCCGGAA CAATTTCGAA
GTGGCGGTGG ACAGCTACGG AACCATGTGG CAGTCGGACA ACGACGACGA CGGCAACAAG
GGCGTGCGGA TCAACTACGT GATGCAGCAC GGTAACTACG GCTACACCGA CGAGATGACC
GGCGCGGGCT GGCGGGCAAA CCGCACTAAT ATGGAGGACT CGATACCCTA CCGCCACTGG
CATTTGAATG ACCCCGGCGT GGTCCCGAAC CTGCTTCAAA CCGGCTCAGG CTCGCCTACG
GGAATGGTCG TGTATGAGGG TAAGCTGCTG CCGAAGGAAT TTTGGGGACA AATGATCCAC
TGCGAACCGG GGCATAATGT GGTACGCTCT TATCCGGTTG AAAAAGCCGG GGCGGGGTAT
TCTGCTAAAA TCGTCAATAT CGTCGACGGC AAGCGCGACC AGTGGTTCCG CCCGTCCGAC
GTGTGCGTGG CGCCCGATGG CTCATTGCTC GTTTCCGACT GGTACGATCC GGGTGTGGGC
GGCCACCAGG CCGGCGACCA GGGCAAAGGC CGCATTTATC GTGTAGCGCC TGCAAACGCG
CCTTATCGCA TTAAAAAAGC GGATTTCGCG ACGGTGTCCG GCGCAATAGA GGCATTGCAA
AGTCCTAACC TCTCGGTGCG CTACCATGCC TGGACTTCCC TGCATACCAT GGGCGCCAGA
GCGGCTCCTG GATTGGAAAA GTTGTTTGCC AGCAAAAACG CCGAGCCCCG CATGCGGGCG
AGGGCGATGT GGCTCCTGAG CAAGTTCCCA TTTACGGCTA AAAAGACGGT TGAACTGGCT
ATTAAAGATG CCAATGCGGA TATCCGGATT GCCGGGCTGC GCGCCGCGGC GGAGTCGGAG
CATGTGGACG TGCTTCCTTA TATTAAAACA TTGGTCAAAG ATCCCGAAGC GCAGGTCCGT
CGCGAATGCG CATTGCTATT ACACCATAAC CCCTCGCCCG AAGCGCCCGC ATTGTGGGCT
ACGCTGGCGC AGCAGTACGA CGGCAAAGAC CGCTGGTACC TCGAAGCGCT CGGCATCGGC
GCCGATGCAC AGTGGGATTC GTTTTTCAAG GCATGGCTCG GCAAAGCGGG CGCAAATCCT
GTGGCTACGC AGGCCGGAAA AGACATAGTG TGGCGCTCGC GCGGCAAAGA ATCCGTGCAG
CTGCTGGCTT CGCTGGCGGG TGATCCTTCG GTGGATTTGA AAAGCCGGTT GCGCTATTTC
CGGGCATTTG ACTTCAATTC GGCAGGTCGC GAAAAATCAA TGGCATTGCT GAAACTGACC
AACGGCTCAG GCGCGCACCA GGACAAAGTG AACGAACTGG TGATGCGCCA CCTCGATCCG
GCATTTGTGA AGCAAACGCC CGAGGCGATG GCCGCATTAA AGCGCATGCT CGACCGGACA
TATGGCACGC AAGCCTACCT CGAACTCGTC GCGAAATACG AGATCCCTTC TGAAAACGAA
CGGTTACTGA AAATGGCCAT GGAGCAATCC AGCAGCCGCC TCGGATCGAC GGCGGCGGGG
CAGCTGATCA AGCAGGGCGG CACGCCATTG CTTTGGAAGG TGGTAAAAGG TTCGGATAGG
ACAAAAAGTG CGGCCGTGTT GACAGCGCTC AAATCGGTTG GAAGCAAGGA TGCCCTCGAT
ATTCTGAAAA CGGCGGCCAC CGACACCAGC TACCCCGAAG ACCTGCAGAT TATCGCGGCC
AGATCGCTCG GCGGCACCAT GAGCGGTGAA GATCAGGTAC TGGTGCTGCT CAAAGACGGC
AAGCTCACCG GCGAGGCAAA AACAGCCGCC GTTCAGGGCC TGAATGGCGC CTGGCGGAAA
TCGGTGAAAA TGGAAGCCGC CAAATACCTC GATGGAGCGA CTGTGGCCGT GAAAAAGCAT
CCAGAAGTGA AAGAGCTTAT AGGCATGAAA GGTGACCTCG CAAAAGGCAA GCAGGTATTT
ACGTCCTACT GTTCGGTGTG TCACCAGGTG AATGGCGAAG GGATGGATTT CGGCCCGAAA
CTGTCCGAAA TCGGCAGTAA GCTGCCTAAG GAAGCCCAAT ACGCCGCCAT TTTCGACCCC
AGCGCGGGTA TCGGCTTTGG TTATGAGGGT TTTGAAGTGA CGTTAAAAGA CGGTACCGCC
GTGTCGGGCA TCGTTTCCAG CAAAACCGAA ACAGACCTGA TCCTCAAATT CCCCGGCGGA
TCAACCCAGG AATATAAAAT GTCGCAGGTC AAATCGATCA AGCAGCTGAA AGACTCGATG
ATGCCCGCAG GCTTGCAGGA TGCAATGAGT ACGGAGGAAT TGGTGAGTCT GGTGGATTAT
CTGAGTAATT TGAAGAAGAA GTAG
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| Protein sequence | MNFKKSILLF PAGCLLAGLM VASYQRSNPS TIDAARADTL YKDLTDAQKR SSRYAVAGLT
VTNGLEATLF ASEPTITNPT NIDVDHLGRV WVCEAYNYRP AINGNPTKNE GDRIVVLEDT
NGDGKSDKST VFYQGSEINA PLGVWVMGNK VIVSQSPYVW LFTDEDGDLK ADKKEVIFEG
IGGDQHDHGM HAFVFGPDGK LYFNFGNEGN HLLDGKGNPI VGKDGKPIDF SKLKQGMVFR
CDPDFNNIEV LGNNFRNNFE VAVDSYGTMW QSDNDDDGNK GVRINYVMQH GNYGYTDEMT
GAGWRANRTN MEDSIPYRHW HLNDPGVVPN LLQTGSGSPT GMVVYEGKLL PKEFWGQMIH
CEPGHNVVRS YPVEKAGAGY SAKIVNIVDG KRDQWFRPSD VCVAPDGSLL VSDWYDPGVG
GHQAGDQGKG RIYRVAPANA PYRIKKADFA TVSGAIEALQ SPNLSVRYHA WTSLHTMGAR
AAPGLEKLFA SKNAEPRMRA RAMWLLSKFP FTAKKTVELA IKDANADIRI AGLRAAAESE
HVDVLPYIKT LVKDPEAQVR RECALLLHHN PSPEAPALWA TLAQQYDGKD RWYLEALGIG
ADAQWDSFFK AWLGKAGANP VATQAGKDIV WRSRGKESVQ LLASLAGDPS VDLKSRLRYF
RAFDFNSAGR EKSMALLKLT NGSGAHQDKV NELVMRHLDP AFVKQTPEAM AALKRMLDRT
YGTQAYLELV AKYEIPSENE RLLKMAMEQS SSRLGSTAAG QLIKQGGTPL LWKVVKGSDR
TKSAAVLTAL KSVGSKDALD ILKTAATDTS YPEDLQIIAA RSLGGTMSGE DQVLVLLKDG
KLTGEAKTAA VQGLNGAWRK SVKMEAAKYL DGATVAVKKH PEVKELIGMK GDLAKGKQVF
TSYCSVCHQV NGEGMDFGPK LSEIGSKLPK EAQYAAIFDP SAGIGFGYEG FEVTLKDGTA
VSGIVSSKTE TDLILKFPGG STQEYKMSQV KSIKQLKDSM MPAGLQDAMS TEELVSLVDY
LSNLKKK
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