| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2872 |
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| Symbol | |
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| ID | 8226445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 3538365 |
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| End bp | 3539267 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644930702 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003087252 |
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| Protein GI | 255036631 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00133727 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0357921 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAAGAA GAGATTTCCT GAAAAACACC GCCATGGCAG CATCTGCCGT GGCGGCGGGC
TCTTCGGTGC TGTACGGTGC CGAAGCGGCG GCTGCATCCG CGGCCAGCGC ACCAGCGGTT
GCGGCACGCC CGATGGTGAA GAAAAGCCTT AAATGGGGTA TGGTAAAAGA AGATTTGTCG
ATTATGGACA AATTCAAACT CCTCAAAGAC CTTGGCTACG ACGGCGTCGA ACTCGACTCG
CCCGATAAGC TGGATATGAA GGAAGTGCTC GCCGCGCGCG ACAAAACGGG CCTCGAACTG
CCGGGAACCG TGAACTCGAT GCACTGGAAG CTCCCATTGT CCGATCCCGA TCCGAAAAAG
CGCGAAGAAT GCGTCAAATC CATTGAAAAA GCATTGCACG ACACCAAACA ATACGGCGGC
ACGACCGTCC TTGTGGTGCC GGGCGTGGTG AATGCGAATG TCACTTATGC AGAAGCCTAC
GAGCGCTCGC AGGCGGAAAT CCGCAAACTG CTGCCGGTGG CCGAGAAGAC GGGCGTTAAA
ATCGCATTCG AAAATGTTTG GAACCAGTTC CTGATCAGCC CGCTCGAAGC AGCCCGCTAC
GTGGACGAGT TCAAGCACCC GATGGTAGGC TGGTATTTCG ATGTCGGCAA CGTGCTGCGT
TACGGCTACC CCGTTTCGTG GATCGAAGCA TTGGACAAAC GCATTCTCAA ACTGGATTTG
AAAGAATTCA GCTTCAAAAA ACAAAACGAC CTGGGCCTGT GGAAAGGCTT CGACGTAGAG
TTCATGGAAG GCGATTGCAA CTGGGCCGAG GTAAACAAGG CATTGCAAAA AGATCGGCTA
CTCCGGCTGG GCATCGGCCG AGGTTTCCGG CGGCGACCGC AAACGTTTAT TAACTATCCG
TGA
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| Protein sequence | MQRRDFLKNT AMAASAVAAG SSVLYGAEAA AASAASAPAV AARPMVKKSL KWGMVKEDLS
IMDKFKLLKD LGYDGVELDS PDKLDMKEVL AARDKTGLEL PGTVNSMHWK LPLSDPDPKK
REECVKSIEK ALHDTKQYGG TTVLVVPGVV NANVTYAEAY ERSQAEIRKL LPVAEKTGVK
IAFENVWNQF LISPLEAARY VDEFKHPMVG WYFDVGNVLR YGYPVSWIEA LDKRILKLDL
KEFSFKKQND LGLWKGFDVE FMEGDCNWAE VNKALQKDRL LRLGIGRGFR RRPQTFINYP
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