| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2755 |
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| Symbol | |
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| ID | 8226327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 3405480 |
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| End bp | 3407756 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644930584 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003087135 |
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| Protein GI | 255036514 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.202192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.502255 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTACAGA AAATCCGCTT ACTTGTATTG ACAGGTATGT TGCTGATGTT GAAGGCGTTA
TCGCCCCAGC CTTTGTCAGC GCAGGATTTT AGTGAGTGCC AGCGGATTGT AAAAGAACTT
CTACCTACGT TCAACAAGTC ATTCGAGGAT AATAATCCTG CGTTGCTCCG CGACGAGAAA
TATCAGCGCG GCATCCGTAA CCTTCAGGCG GCATACGCCC TCTACCATAA GCAGGCATTC
CAATCGTCCG ATTCCGCTCA GCGAATGAAT AATGAGGCAG TGATCCTGGC GCTTTCAGGC
AATTACCAAA AGGCGTTGCA CATCATGGAA GCGCTGGATT TCGGCGAGTC GGACCAGCAA
ATGCATTACA ACCGCGGGCT TTTTGCATTG CTTTCGGGGA AATTCGATGC GGCCAGGAAC
GATTTCGGAC AATCGCCGGG GAGTTCGGAG GCTAAGCTGA ACACGCTTGT TGCATTAGCA
AGGCAGAAAA AATTCCAGGA GGCGGAGCAA TTTGCCAGTG ACAATTCGGC CAAAAGCACC
GGCGGGAAAT GGAACTTCAA CATCGGGATG GTGCACAAAT ACGGCGGGCG CATGGAAGAG
GCCGTGGCCG AGATCACCAC GGCGATCCGG CAAAAGGACG AAATGGCATA CCGCCTTCAA
CGAGGCGATA TCCTGATGCG GACCGGCAAT GAGAAACGCG CCGTGAAGGA TTTCGAGAAG
GTGGCCCGCA CGCACCCAAA AGCGCAGATC CGCTACGCCA ATGCATTGCT TTCGCTCAAC
CAGTTCGGCA TGGCGAAAGC CGTTTTTGAA AAATACCTCG AAACCGACGA CCGCACATTC
CGCGGCGACG CCTACCTGGG TATGGCGCAT TCGAGCTACG GCCTGCAACA AACCGGCGAG
GCGCAGCGGT ACTATAAGCT CGCCTCGACG CTGAAAAGGG AAACGCCCGC GCTGCAATCG
GGCATCGCGA ACACGCATTT GTCCAAACAC GAGTACCAGA CGGCCTTCAA CCTTTTCGAC
CGGGTGATCA AGAAAGATTC TACCTACCTG CCGGCTTACC TGGGCCGGGC GGTCGCTTAC
TACGGGCAGA AAAAGTACGA CCTCGCATTG CGGGATTTCA AGAAGGGCGA GAAGGCGCTG
AACGAGGACA ATAAGTTCTT CGCGGACCTG TTCGTAACCA AAGCTTTTTC CGAATACTAT
CTCAAACAAA CCTCCCAGGC TCAGGAGGAT TTCCAGAAAG CGATCAAACT CGACCCCGCG
CGCTACGAGG CGCTGGCCGG GCTGAGCGGC ATCATGATCG ATTCGAAGCG GTATTCCGAA
GCGGGGCAAT ACCTGGCCAG GGCGCTGCAA TATGAACAGG GTTACGACCT GATGTGGAGC
AATTACGGCA ACCTGCTACT GCATTTTGAT ATGTACAAAA AAGGGTATCA GGTGTTTAAA
AAGGCAGTGT CGCTCAATCC GTCCAACGTA AATGCGCAGA ATGGCTGGGG CATTGCATTG
CTTGAAAACG ACCAGCTCGA CAAGTCGATG GCGGTGTTCG ACAGCCTCGT GCGCGAGAAG
CCGGAGCTGC CTTTCCTGCA TAATAATCAC GGGATCGTTC AGGCATATAT CGGTAACCGG
CATGACCAGA AACACCAGGT GAACGAAGCG AACACGCGGT ACGACGGTGC GTTTGAGGAC
TTTAAGCTCG CGATGGACGC CGCGCCGGGA CGCAAGTTTT ACAATGTGAA CCAGGGCAAT
GTGTATCGGT ACATGGAGCG GTACGACGAT GCCAAACTAA GTTACCAGAG CTATCAGGAC
AAAAGCGCGC TGAACAACAC TGCGGTGATG TACGCAGGCC AGGAGCGCCT CAAAGATGCC
AAATACTACC TCGGCGTCGC GCTCCAGATC GACTCGCTGC ACCGGGTTTT TCAATACAAT
ATGTCGGTGC TGGTGAAAGG CAAGCAGAAG GAAATGATGC GGCTGGTGGC GTCGTCCGAC
GAAAACAGCC CGTTTTCCGA TATCGGCATT AAATACAGCC GTGACGGTTT TGTGACGATC
TATCTCTATG ATTACGAATA TGACGTACTG ACTTTCCCGG GGAGGCATTA CATGCCACTG
CCCGTGGCCG AATACAAGGA AGATTACTTT ATCCCTGAAT ATGACTTCAA ACTGGTGCCT
TATGAGAAGA AGAAGGTGCC GGCCGTTAAA AAGAAGCGTG TGCGTTACCA CAGTCAGAAG
GTCCGGATGC CGGGCAGCAG GGGCCGATCG GGAACCAAAT GTCCGATCCT GTTTTAG
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| Protein sequence | MVQKIRLLVL TGMLLMLKAL SPQPLSAQDF SECQRIVKEL LPTFNKSFED NNPALLRDEK
YQRGIRNLQA AYALYHKQAF QSSDSAQRMN NEAVILALSG NYQKALHIME ALDFGESDQQ
MHYNRGLFAL LSGKFDAARN DFGQSPGSSE AKLNTLVALA RQKKFQEAEQ FASDNSAKST
GGKWNFNIGM VHKYGGRMEE AVAEITTAIR QKDEMAYRLQ RGDILMRTGN EKRAVKDFEK
VARTHPKAQI RYANALLSLN QFGMAKAVFE KYLETDDRTF RGDAYLGMAH SSYGLQQTGE
AQRYYKLAST LKRETPALQS GIANTHLSKH EYQTAFNLFD RVIKKDSTYL PAYLGRAVAY
YGQKKYDLAL RDFKKGEKAL NEDNKFFADL FVTKAFSEYY LKQTSQAQED FQKAIKLDPA
RYEALAGLSG IMIDSKRYSE AGQYLARALQ YEQGYDLMWS NYGNLLLHFD MYKKGYQVFK
KAVSLNPSNV NAQNGWGIAL LENDQLDKSM AVFDSLVREK PELPFLHNNH GIVQAYIGNR
HDQKHQVNEA NTRYDGAFED FKLAMDAAPG RKFYNVNQGN VYRYMERYDD AKLSYQSYQD
KSALNNTAVM YAGQERLKDA KYYLGVALQI DSLHRVFQYN MSVLVKGKQK EMMRLVASSD
ENSPFSDIGI KYSRDGFVTI YLYDYEYDVL TFPGRHYMPL PVAEYKEDYF IPEYDFKLVP
YEKKKVPAVK KKRVRYHSQK VRMPGSRGRS GTKCPILF
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