| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2292 |
|---|
| Symbol | |
|---|
| ID | 8225864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2828429 |
|---|
| End bp | 2831500 |
|---|
| Gene Length | 3072 bp |
|---|
| Protein Length | 1023 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644930127 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003086678 |
|---|
| Protein GI | 255036057 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAA ACTACCTCGG TGGCTGGACT CCCTGTTCGG TCATTCTCAC ACTTATTATT
CTTTTCAGCC ACCTCGAAGT GGTTGCACAA AACCTGAACA TCACGGGTAC CGTCCGCGAC
GTGCAGGGAG CTCCGCTTCC GGGAGTCAGC GTTGTGATGA AAGACGCAGC AACGGGCACG
ATTACAGATG TGGATGGAAA ATTCTCCATT CAGGCTCCAG AAGGAAGCAC GCTCACTTTC
AGCTTTATCG GCTATCAGAC AGCAACCGCA AAAATTGCCA ATTCGGACGT GCTGAATATC
CAGTTGCTCA CCGATGAAAC CGATTTGAGT GAAGTAGTGG TGGTTGGCTA CGGTACGCAA
ACGAAGCGCG AGCTGACAGG AGCGGTGACG AGCATTAAGG CGGCCGAAAT GAAGGACATT
CCCGCCACCA ATATCAGCCA GCGGCTTCAG GGAAAACTGG CGGGTGTGCA GATCAACCAG
AACACCGGCC AGCCGGGGGC TGAGCTGAGC ATCCGGATAC GGGGCGCGGC GTCCATTAAT
GCAGGAAACA ACCCGCTGAT CGTCGTAGAC GGTTTCCCGA CAACCAGCGG CCTGAACGTG
ATCAACCCGG ATGCCATTGA ATCGATAACG GTGTTAAAGG ATGCGGCAGC GGCCTCGCTT
TACGGCTCGC GGGCTGCCAA CGGGGTGATC CTGGTTACCA CCAAGCAAGC TAAAAACGGA
CAAAGGAATG TGCAGTTCAG CAGCTTCGTG GGCGTGCAGT CGGTATCGGA CCGCGGTAAA
CCCGACCTCA TGAATGCCCG CGAATTTGCC CAGTTCAAAA AGGAATATTA CGAAGATGCC
GCGCTTTATG AGGGCTACAC AGGCGGCGTT CCCGAACAGT ACCGGAATCC CGAACAATAC
GGCCCGAATG ATGGTACAAA CTGGTTCGAC GTGCTGCTGC GTACGGCTGC CATTCAGGAT
TATAACCTGT CATTTTCTAC CGACGCCAAA ACCGTGCAGT CTGTCGTGCA TTTGGGTTAT
AACAAGCAGG ATGGCGTGAT GCTCAACAAC TCGGCCAGCC GGTTCACAGT CCGGGCAAAT
AATGTGTTTT CCATCTCCGA AAAACTACGG TTTGGTCTTA ACCTCGGGGC GACGCATTAC
ACCACCAACA TCACTCCCAA CCTGGGCGAG GGCCGCAATG TAATCCAGAT CGCCTACCTG
TCGGACCCTA CGCTGAAATA CAAAAATGAC GATGGCACCT ACCCGATCGG TTTCGCGCCT
CCCGGGATGT TTTCAACGCC CAATTATTAT CAGGTACTTA AACAAACGGT AAACCCGGCC
AAGTACATGA TCCTGATGGG AAATGCTTAT GTGGATTATC AGATATTGAA GGGGCTGACA
TTCAAGTCGA GCATGAACAT CAATACGAGC AATGACATTA ACAGGCTATT CCAACCATCG
ACCATTCTCG GAGGGCCTAC GCCCGCAGCC TCGGCCAGCG GAAGCTACAA TACGGCCAAT
TACATGTCGT GGTTATCAGA GAATACTTTG ACCTACAACA AATCTTTTGG CAACCATAAC
CTGGAAGCGC TGGCGGGTTA TACCACGCAG AAGGTTACAA ATGAGAACAG CAATATCAAC
GGCAGCCAGT TTCCGGACAA CAGCATTGAA TGGCTGAATG TAGCCGCCAA CCGGATCGGG
AATGTGGGCG CCAGCGACTA TTCCCTGATT AGCTACCTGG GGCGGTTGAA CTATAACTTC
AAAGGAAATT ACCTGGTTTC CGTGGCTTTC CGAAGTGACG GTTCGTCCAA ATTCGGCTCC
AATAACCGCT ACGGCACATT CCCTTCGGCC TCGCTGGGGT GGGTGGTGTC TGATGAGCAA
TTCATGAAGC GCTTCAAATC TATCGATTTT CTCAAACTGC GGGCGAGCTA TGGAAAGGTG
GGTAACAACA ACATCGGTAA CTACACTTAC CTGGCAGGTG TGAATCCGGC CAATTATGTA
TTCAATAATG CTTTGGCATC CGGCCGCGCA CTGGCGGGAA TCGGGAACTC CAATCTGACC
TGGGAAACGA CCACCGGTTA CGATTTCGGT CTGGACCTCT CACTGCTGAA CAACCGCATC
AATTTCACTT ACGATTATTA CAAAAAGAAA ACAGACGGCC TGCTGTATGC CATTGATATT
CCGGTACAAT CAGGCTACTC GGCGGTTACC TCAAACATCG GACGGTTTGA TTTCTGGGGA
CATGAGTTTG CCATTGACAC GCGGAACATT GAAGGGAAAT TCAACTGGAG TACCAGTTTC
AATATTTCAT TCAACCGCAA CCTGGTCCGT AAGCTTGGCA CCAACGACGC GCCTATCGGT
GGCTATCAGG AATATTGGGA CGATAACCGC ACGGCTGTCG GCAATCCGAT CGGACTTTTT
TACGGGTACA TCAACACCGG GGTGTACATG ACCCAGGAGG AATTTGAAAA CCAGCCGCAT
GGCGCCACTT CCATGGTAGG TACTGCGCGT TTTGCGGACA TCAGCGGGCC GGATGGAGTA
CCGGACGGAA AGATCGACAT CAACGACCGC ACATTTATCG GCAATCCAAA TCCCGACTTT
GTGTACGGAA TGACCAACAC GCTAAGCTAC AAAAAACTGG ATTTCTCCAT GGTTATCGCC
GGAACAGTTG GTAATGATAT CGCCGACGAC GCATTCCAGT CCACCGAAAA TATCGACGGC
GTCTTCAATG TGCGCAAAGG CGTAGCGAAC CGGTGGCGCT CGGAGGAGAA TCCGGGGGAT
GGCATTTACC CAAGAACGCG TGCGGGTACC ACAGCCGATT TCCGGAATTT CTCCACGCGG
CAGGTGTTCA GCGGTAGTTA TCTGGCTGTC AAGAATATCA CGCTGGGTTA CCTCATTCCA
ATCGGCAGTA AAACAACCGT AAAGAGCGTC AGGGCGTATT TCAGTACGCA AAACCCTTTC
ATGTTTACCA AATATCCGGG CATGAACCCC GAAGTTGGCC TGGCGGGACT GAACGGTTTG
AATCTGGGGC GTGACTTTAC CGCTTTTCCG ATTGCGAGGG TGTACACGCT TGGCCTTAAT
GTTAATTTCT AA
|
|---|
| Protein sequence | MRKNYLGGWT PCSVILTLII LFSHLEVVAQ NLNITGTVRD VQGAPLPGVS VVMKDAATGT
ITDVDGKFSI QAPEGSTLTF SFIGYQTATA KIANSDVLNI QLLTDETDLS EVVVVGYGTQ
TKRELTGAVT SIKAAEMKDI PATNISQRLQ GKLAGVQINQ NTGQPGAELS IRIRGAASIN
AGNNPLIVVD GFPTTSGLNV INPDAIESIT VLKDAAAASL YGSRAANGVI LVTTKQAKNG
QRNVQFSSFV GVQSVSDRGK PDLMNAREFA QFKKEYYEDA ALYEGYTGGV PEQYRNPEQY
GPNDGTNWFD VLLRTAAIQD YNLSFSTDAK TVQSVVHLGY NKQDGVMLNN SASRFTVRAN
NVFSISEKLR FGLNLGATHY TTNITPNLGE GRNVIQIAYL SDPTLKYKND DGTYPIGFAP
PGMFSTPNYY QVLKQTVNPA KYMILMGNAY VDYQILKGLT FKSSMNINTS NDINRLFQPS
TILGGPTPAA SASGSYNTAN YMSWLSENTL TYNKSFGNHN LEALAGYTTQ KVTNENSNIN
GSQFPDNSIE WLNVAANRIG NVGASDYSLI SYLGRLNYNF KGNYLVSVAF RSDGSSKFGS
NNRYGTFPSA SLGWVVSDEQ FMKRFKSIDF LKLRASYGKV GNNNIGNYTY LAGVNPANYV
FNNALASGRA LAGIGNSNLT WETTTGYDFG LDLSLLNNRI NFTYDYYKKK TDGLLYAIDI
PVQSGYSAVT SNIGRFDFWG HEFAIDTRNI EGKFNWSTSF NISFNRNLVR KLGTNDAPIG
GYQEYWDDNR TAVGNPIGLF YGYINTGVYM TQEEFENQPH GATSMVGTAR FADISGPDGV
PDGKIDINDR TFIGNPNPDF VYGMTNTLSY KKLDFSMVIA GTVGNDIADD AFQSTENIDG
VFNVRKGVAN RWRSEENPGD GIYPRTRAGT TADFRNFSTR QVFSGSYLAV KNITLGYLIP
IGSKTTVKSV RAYFSTQNPF MFTKYPGMNP EVGLAGLNGL NLGRDFTAFP IARVYTLGLN
VNF
|
|---|
| |