| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2207 |
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| Symbol | |
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| ID | 8225779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 2701653 |
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| End bp | 2705138 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644930043 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086594 |
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| Protein GI | 255035973 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.582294 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA ACCGATACCG AAAAAACCGG GCGTCGCTTT GCTTGCTCAT GAGAATCACT
TTGGCCCAGC TCATCTTTTC GATTGTTTTC TCCGGCCTCA CCTACGCCGC GCACGTCAGT
AAAGCGCAGG AAGTACTGGA ACGGAACGTC ACGCTCCATG CCGACAAGGT GGAGCTGGCA
ACGGTCCTCG ACCAGTTGGA GCAGAAAGCG AACGTCAGGT TCGTATACAG CAACAAGGCC
ATCCGGGCAT CGCGGCCGGT GGCGATCCAT GTTGTCAACC AAAAATTGTC GGCCGCATTG
CAGCAGCTGC TCACACCATT GCAGATTTCC TACCAGGTGA CACCTTCGGG ACGTATACTG
CTCAAAGCCA GTAAGGAACT TCAAACCAAA AGTGCAGGAC AACTCCAGAT TCAAATGAGG
GACATGGCGG CGCTGGTGCT GAAAGGAAAA GTAAGCGACG AAAATGGCGA CGGCCTCCCG
GGCGTGAGTG TACGCCTGAA AGGCACGCAG CTCGGTACGC TCACGGACGC TTCCGGGAAT
TACGAACTGG AAGTGAACAA TGTGGAACCG GTGCTGGTGT TCAGCTTCGT AGGTTATAAA
ACGCAGGAAG TTGCCGTAGG CGACCAGGCT GTGGTGAATG TATCGATGAC CCCCGATTTC
AAATCGCTCA ACGAGGTGGT GGTGATCGGC TACGGTAGTT CGCGGAAGCA GGATGTGGTG
GGCTCGGTGG ACATTGTTTC CTCTAAAGAT GCCGGTGCAA ACACCGCTAC CAACCCTTCG
CAACTGCTGA TCGGCAAGTC GGCCGGCGTG CAGGTGCTGC AATCCAACGG CACACCCGGC
GCGGACGCCC AGATCCTTAT CCGCGGTACC GGCTCGTTCA CGGGTGTGGA CCCGCTCTAC
GTGATCGACG GTATCCAGGG CAGCAAAACG ATGTTCAACA CCCTGGCGAC CCAGGATATC
GAAAACATTA CGATCCTGAA AGATGCTTCA TCCACCGCCA TTTACGGCTC TGCCGCGGCG
AACGGCGTGG TGATCATCAC CACCCGGAGG GGCAAATCGG GCGCGCCGCG TATTAATTTC
AATACCCAAT GGGGTGTTGC CAAAGCATGG AAAACGCTGG ACCTTCTCAA TGCGGCGCAA
TATGTGGACC TGCTGAAAGA TTTCGCGGCT ACGACCAATT CCGCATTGCC CGCCAAATTC
AACACGCCTG ACGTCACCAC CGACCGCACC GACTGGCAGA AAGAAATATT CCGGCCCGCC
CTGGTTTCGC AAAACGATTT GAATATCAGC GGAGGCGGTG AAAAAGTGTC CTACAACTTT
TCGATCAGCT ATATTAAACA GCAGGCCATT GTGAAAAACT TCGCCAACAG CCGGGTAAAT
GCCCGTTTTG CACTGGACGA AACGCTGGGC CGCTTCCGGT TGGGACAAAG CCTGAACATC
CGCTACACGA AGGACGATGG CCAGATCGCC AGCATTTCCG ACGCGGTGTA CTATGCGCCC
TACAAGCCCA TTTACGATCC CACGATCCCC GGCGGCTACT CCAACACGAC CAATGTGGAC
GATTTCAGCA ATGGTAACAA CCCGCTGGCG GCCATTAACC TGAACCGCCC GGTAAACACC
GGCTTCGTGT TCTTCCCGCA GTTTTTTGCC GAAGTGGATA TTCTCGGCGG GCTGCGTTTC
CGTACGCAGT TTTCGGCCGA GATCGGCGGC GGCAAAAGCC GTGGCTACCA GTACGGCTAC
ACGGCGGGCA ACAACCTGAC CAATCCGCAG CAGGCTACCC TCGGTTTCAG CAACTATTCG
TTTTACACGC TCGAAAACTA CTTTTCCTAT AATAAGGTAT TTGGAAGACA CAGCGTTTCG
GCAACCCTCG GTAACAGCTA CCTCGATCCG GGCAACTCGT CCGGCCTGAA TGCGACCGGT
ACTAGAATTC CCAACGACGC CATTCAGAAC ATCAGCGTGG CGCAATCGCA GGCGGTTACC
GGCTCGAACT ATGGCTATGC ACGCTCGTCG GTGATCTCGT ATTTCGCTCG CCTCGGTTAT
ACTTATGCCG ATAAATACAT TCTGACGGGA AGCTTCCGCC GCGATGGTGC CTCCAACTTT
GGTGCCAACA ACCGGTTCGG GAATTTCTAC GGTCTGGGCC TGGCGTGGCG GTTTGTGGAT
GAGGATTTTA TCAAAAACAA CCTTGCTTTC CTGAGCGACG GCAAGCTGCG GCTGGGGATC
GGAAGAACCG GGAACAATAC CATTCCCACC ACCGGCGTAA CATCCGTACT CACTTACAGC
GGCAGCCCCA ACGGCAACCT GGTGTATTCA CTGGGTACCA ACGAAGGCTT CTACCCAGGC
ACGACGATCA ACACCTTGTC CAATCCCGAC ATCCGCTGGG AATCGACCGA CCAGACGGAC
ATTGGCCTCG ACCTGGGGTT CCTCAGCAAC CGCCTGAATG TGACTGTTGA CTGGTACAAC
CGCAAAAGCT CCGGCCTGCT CGTAAGTGTC CCGGTTTCGG GCAGCACGGG CGCATCGGGC
AGCGGTGGCC AGCCCAGCAA ATACGCCAAT GCGGCCAGCG CTCAAAACAA GGGCGTAGAG
TTTTCGGTCG GCTATCGCGA CCAGGCCCGT GGAGGTTTTC AATATAATGT AAGTGCGAAC
GTGGCTTACA ACAAAAACAT CGTCAACTCG CTGGGAAGTG AATTTGCGGC GCCTATCCAG
GCCGGGGCAT TCAGTAATCT GCCCACATTT ACCTACACGG CAGCGGGATC GGCCATCGGT
TCGTTCTTTG GCTACGAGGT ATCCCACGTC GCAAAAGATC AGGCGGAGAT AGATGCATTG
AACAAAAGCG CTGCCGAACA AAGCGGCGAC GCCGCCACCA AATACCAGGC GGGCTTGCTG
CCGGGCGACT TCATATTCAA AGATCTCGAC GGCGACGGCA AAGTAACCTC CACCGACCAG
AAAATCCTCG GCAACCCGAT TCCGAAAATC GTGTACGGCT TCAATGCCGG TGCCAGTTAC
AAGGGCTTTG ATCTGAACCT CGTCGTATCG GGCGTATCGG GTTTGAAAAT CCTGAATGCA
TTCAAATTCG TGACCGACAA TGAATCCACA GGGCACAATG CTTCTACCGA AATCCTGAAA
AGATGGCGTA AGCCGGGCGA TGTCGCCGAA CTTCCGCGTG CAGGCCAGAG CGCTACCGGC
GACGGTAACC TCCGCCCTTC CGACTGGTGG CTCGAAAGCG GCGCTTACCT GCGCGTACGC
AACCTCACGG TGGGCTACAC CCTACCCCAG AGCGTGATCA GCGGCATTGG CGGCGGCAAA
ATTTTCAATA CCATCAGAAT CTACGCCGCG GCCCAAAACC TGCTGACGTT CACCAAGTAC
AAAGGCTACG ACCCCGAAGT AAGCACCCAG AACGGCGGAA GCTACATTTT CTCGCGGGGT
ATCGACGACC GCCAGCAGCT GCCTCAGCCC AGAACATTGC TTTGCGGCTT ACAGCTCGGG
TTTTAA
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| Protein sequence | MKKNRYRKNR ASLCLLMRIT LAQLIFSIVF SGLTYAAHVS KAQEVLERNV TLHADKVELA
TVLDQLEQKA NVRFVYSNKA IRASRPVAIH VVNQKLSAAL QQLLTPLQIS YQVTPSGRIL
LKASKELQTK SAGQLQIQMR DMAALVLKGK VSDENGDGLP GVSVRLKGTQ LGTLTDASGN
YELEVNNVEP VLVFSFVGYK TQEVAVGDQA VVNVSMTPDF KSLNEVVVIG YGSSRKQDVV
GSVDIVSSKD AGANTATNPS QLLIGKSAGV QVLQSNGTPG ADAQILIRGT GSFTGVDPLY
VIDGIQGSKT MFNTLATQDI ENITILKDAS STAIYGSAAA NGVVIITTRR GKSGAPRINF
NTQWGVAKAW KTLDLLNAAQ YVDLLKDFAA TTNSALPAKF NTPDVTTDRT DWQKEIFRPA
LVSQNDLNIS GGGEKVSYNF SISYIKQQAI VKNFANSRVN ARFALDETLG RFRLGQSLNI
RYTKDDGQIA SISDAVYYAP YKPIYDPTIP GGYSNTTNVD DFSNGNNPLA AINLNRPVNT
GFVFFPQFFA EVDILGGLRF RTQFSAEIGG GKSRGYQYGY TAGNNLTNPQ QATLGFSNYS
FYTLENYFSY NKVFGRHSVS ATLGNSYLDP GNSSGLNATG TRIPNDAIQN ISVAQSQAVT
GSNYGYARSS VISYFARLGY TYADKYILTG SFRRDGASNF GANNRFGNFY GLGLAWRFVD
EDFIKNNLAF LSDGKLRLGI GRTGNNTIPT TGVTSVLTYS GSPNGNLVYS LGTNEGFYPG
TTINTLSNPD IRWESTDQTD IGLDLGFLSN RLNVTVDWYN RKSSGLLVSV PVSGSTGASG
SGGQPSKYAN AASAQNKGVE FSVGYRDQAR GGFQYNVSAN VAYNKNIVNS LGSEFAAPIQ
AGAFSNLPTF TYTAAGSAIG SFFGYEVSHV AKDQAEIDAL NKSAAEQSGD AATKYQAGLL
PGDFIFKDLD GDGKVTSTDQ KILGNPIPKI VYGFNAGASY KGFDLNLVVS GVSGLKILNA
FKFVTDNEST GHNASTEILK RWRKPGDVAE LPRAGQSATG DGNLRPSDWW LESGAYLRVR
NLTVGYTLPQ SVISGIGGGK IFNTIRIYAA AQNLLTFTKY KGYDPEVSTQ NGGSYIFSRG
IDDRQQLPQP RTLLCGLQLG F
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