| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2083 |
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| Symbol | |
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| ID | 8225655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 2537995 |
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| End bp | 2539620 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644929920 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003086471 |
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| Protein GI | 255035850 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.583803 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGGAAG AACTTTGGTA TAAAAACGCC GTCATTTACA GCCTCGACCT TGAGACTTTT
ATGGACGGCA ACAATGATGG TACGGGCGAT TTCGAAGGAC TTTGCAATCG CCTCGATTAT
TTACATGCAT TGGGGCTGGA CACGATCTGG CTGGCCCCGT TCCAGCCCAC TCCGAACCGC
GACAACGGCT ATGATATCAG CGATTTCTAC GGCGTAGACC CGCGCCATGG TTCCAGCGGC
GATTTCGTGG ATTTTATTCA CAAAGCCCGC AAGCTGGGGA TTAAAGTAAT CATCGACCTA
GTTGTGAATC ATACTTCCGA CGAACACCGG TGGTTTAAAG AATCGCGCAG TTCCAAAGAT
AATCCCAAAC GGCACTGGTA CGTGTGGTCG GACAAGCGGC CCAAAGGCTG GAACAAAGGG
ATGGTATTCC CCGGCGTACA AAAAGCCACC TGGACGCGCG ACAAGAAAAC CGGCGACTAT
TATTTTCATC GGTTTTACGA ATTTCAGCCC GATCTCAATA CGGATAACCC GGAAGTCCGC
GCGGAAATCA ACCGCATCAT GGGTTACTGG CTCGAACTCG GCATTGCAGG TTTCCGTGTC
GACGCCGTTC CGTTTATCCT CGAATCGCCC GCGGCGGAGG GTAAATCGCC CCTGCATTTT
GAATACCTGA AAGAAATGCG CCGTTTCCTG CAATGGAGGC GGGGAGATGC GGTGCTGCTC
GGCGAGGCTA ACGTGCTGCC GCAAGAAAGC AAGAAGTATT TCGGCGAGAA CGGGGAAGGT
ATTCACCTCA TGTTTAATTT TTATGTAAAC CAATACACGT TCTACGCGCT GGCCACCGCC
GATACGCGCC CGCTCATTAA AGCACTGGAA GCGACGCGCG AAAAAGCGCC GGGGAGCCAA
TGGGCATTCT TCCTCCGCAA CCACGATGAG CTGGACCTGG ACAGGCTCGC ACCCGAGGAG
CGGCAGATTG TATTTGACCG TTTCGGGCCG GAAAAAAACA TGCAGATTTA CGAACGCGGA
ATCCGCCGCC GGCTTTCCCC AATGCTTGGC AACCGCCAGC AAACCGAACT CGCTTACAGC
CTGATGTTCT CATTCCCCGG CACGCCCGTG ATCCGCTACG GCGATGAGAT CGGGATGGGT
GATAACCTGG CACTTCAGGA ACGCGACGCT GTGCGTACAC CCATGCAATG GTCGGGCGAA
GTGAATGGCG GCTTTTCGAG GGCTAACAAG CTGATCCATC CGGTGATCGA TGAAGGATAT
TATGCCTATG AGCATGTCAA TGTGGAGCAC CAGCGGCGCG ACGCGGGCTC GCTGCTCAAC
TGGATGACCA CGCTGATCCG GCTCCGGAAA GAATGTCCCG AAATCGGCTA CGGCGAGTGG
GAAATTATCG ACACCGGTTA CCGTGAAATA TTGGGAATGC GGTATACCTG GAGAAACCGG
TCGCTGCTTA TCTGGCACAA TTTCAGTGAG AAGTCGCTGG AACTCGTTGT GCCTGAAAAC
CAGGCAGGTA CAGGTCGGCT GATAGACCTG ATGAACAACA TAGAAAGCGT GCTGGACCAC
AAGGGCCGGC ATACCATTAC GCTGGAAGCG TACGGGTACC GATGGTTCAA GGCACAACTG
GGATAG
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| Protein sequence | MLEELWYKNA VIYSLDLETF MDGNNDGTGD FEGLCNRLDY LHALGLDTIW LAPFQPTPNR
DNGYDISDFY GVDPRHGSSG DFVDFIHKAR KLGIKVIIDL VVNHTSDEHR WFKESRSSKD
NPKRHWYVWS DKRPKGWNKG MVFPGVQKAT WTRDKKTGDY YFHRFYEFQP DLNTDNPEVR
AEINRIMGYW LELGIAGFRV DAVPFILESP AAEGKSPLHF EYLKEMRRFL QWRRGDAVLL
GEANVLPQES KKYFGENGEG IHLMFNFYVN QYTFYALATA DTRPLIKALE ATREKAPGSQ
WAFFLRNHDE LDLDRLAPEE RQIVFDRFGP EKNMQIYERG IRRRLSPMLG NRQQTELAYS
LMFSFPGTPV IRYGDEIGMG DNLALQERDA VRTPMQWSGE VNGGFSRANK LIHPVIDEGY
YAYEHVNVEH QRRDAGSLLN WMTTLIRLRK ECPEIGYGEW EIIDTGYREI LGMRYTWRNR
SLLIWHNFSE KSLELVVPEN QAGTGRLIDL MNNIESVLDH KGRHTITLEA YGYRWFKAQL
G
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