| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2022 |
|---|
| Symbol | |
|---|
| ID | 8225594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2464702 |
|---|
| End bp | 2465379 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644929859 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003086410 |
|---|
| Protein GI | 255035789 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.613149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA AAGCCCTGTT GATGAGCTCT CAAATGGAAT ATAACGCGAA ACAAATACAG
ATCATAGAAG TGGCGGAGCG GCTGTTCTCA CAGAAAGGTT TCGCCGGTAC CTCGGTGCGG
GATATCGCCC AGGAAGCGGA TGTGAATGTC TCGATGATAT CCTACTATTT CGGTTCGAAG
GAGAAGCTGA TCGAAGCGCT TTTCCAGTTT CGCATGACCG AATCCAGCAA CCGCCTCGAA
ACCCTGATGA TGGCCAGCGA GCTTTCCGCG CTGCAAAAAT TCAATGTCTT CATCGACAGT
GTGATCGACC GGCTGATGGG CAATCAGTGC TTTCATAACA TTATGATGCG CGAGCAGCTG
TCGTCGGAGC GCACGCCGGT TATTTCGGAG TACATCCGCG GACTGAAAAT GCGGAATGTG
GAACTGATCG CGCGGATGAT CCGCGAAGGA CAGGACGCCG GCGATTTCCG GAAGGATATC
AATGTAAGCC TGGTCACCAC CACGCTTTAC GGCACCGTTA ATTACGCCAT TGCCACCCAG
GATTTTTACA GGATCATCAA TGGCCTCGAA CAGCTTTCCG ACGAAGCGTT TCACCAGCAT
TTGCGGACTG AGCTGAGCCA ACACCTTAAG AACTTATTCA AATCAACAAT AACCAATGAA
CACCACGTCC AGAATTAG
|
|---|
| Protein sequence | MTKKALLMSS QMEYNAKQIQ IIEVAERLFS QKGFAGTSVR DIAQEADVNV SMISYYFGSK
EKLIEALFQF RMTESSNRLE TLMMASELSA LQKFNVFIDS VIDRLMGNQC FHNIMMREQL
SSERTPVISE YIRGLKMRNV ELIARMIREG QDAGDFRKDI NVSLVTTTLY GTVNYAIATQ
DFYRIINGLE QLSDEAFHQH LRTELSQHLK NLFKSTITNE HHVQN
|
|---|
| |