| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1860 |
|---|
| Symbol | |
|---|
| ID | 8225431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2299419 |
|---|
| End bp | 2300645 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644929710 |
|---|
| Product | Mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_003086262 |
|---|
| Protein GI | 255035641 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTATA AAACCGAAGT CAAAGACGCC CGTTTTCCGT TGGAAGGCAA CGCGGGCAGC
GACGCCATTC ACCGCGATCC TGTCTATTCC TACGCCGTCA CGCAACTGCT CGATTCCGGC
GGATTGGTCG GAACGGGCTT TGCATTTACG TTAGGCGAAG GCAATGAGCT GGTTTGTCAG
GCGGCGCATT ATTATGCTAA AAAGCTTGTC GGTCTGGACA TTGAAGACTT AATGGCCGAT
TTCGGGACGT TCTATAAAAG TTTGTCCGAC GATCAGCAAT TCCGCTGGCT CGGCCCGCAC
AAAGGCGTGG TACACCTGGC GCTGGCGTCG GTAACGAATG CCTGTTACGA TCTCTGGGCC
AAAAAACGCG GCGTGCCGCT CTGGAAACTG CTCACGGATC TTTCCCCGGA AGCGATTGTC
AATACACTTG ACCTTTCCTA TCTGGAAGAT GAATTGACCA AAGAGCAGGC GATCAGCATA
TTGACGGAGC AGGAAGCTGG GAAGTCAGAT CGAGAAAGTA TTCTGAAAAC GGGTTATCCG
GGCTACGATA CGTCCGTCGG CTGGTTTAAC TATTCGGATG AAAAAGTGCG TGAAAATTGT
CACAAGGCAC TTTCGGAAGG TTTTACGGCG ATGAAACTCA AAGTGGGTTC GGCTGATCCC
GAACGCGATA TCCGGCGTGC GCACATTGTC CGCGAGGTGG CTGGCGACAA TGCGAAAGTC
ATGCTCGATG CCAACCAGCA ATGGAACCTG CCCAATGCGA TTTCAATTTG CAAGAAGCTT
TCGTCCATGA ACCCGTACTG GATCGAGGAG CCCACGCACC CCGACGACGT GCTGGCACAC
CAGACTTTGG CAAAGGAAAT CGCCCCTGTG AAACTGGCGC TGGGCGAGCA TGTTCCCAAC
AAAGTCATCT TCAAAAATTA TTTGCAGGCT AATGCCGCCG CATTTATCCA GGTCGACGCC
GTGCGGGTAG GCGGGGTGAG CGAGTTCCTG ACGATCAGCT TGTTGTGTAA AAAATTCGGG
ATTCCGGTCG TGCCGCACGT GGGCGATATG GGGCAACTCC ATCAGCATCT GGTTTTGTAC
AATCACATGG GTATGGGCCA TGAAGCACTA TTTTTGGAGC ATATCCCGCA TTTGCAGAAG
CATTTTGTAC ACCCGGCGCG TATCAGAAAT GGCGTTTACG AAACGCCGCA GGAGCCCGGC
AGCAGCTGCG ACCTGATCAA ATTTTAG
|
|---|
| Protein sequence | MIYKTEVKDA RFPLEGNAGS DAIHRDPVYS YAVTQLLDSG GLVGTGFAFT LGEGNELVCQ
AAHYYAKKLV GLDIEDLMAD FGTFYKSLSD DQQFRWLGPH KGVVHLALAS VTNACYDLWA
KKRGVPLWKL LTDLSPEAIV NTLDLSYLED ELTKEQAISI LTEQEAGKSD RESILKTGYP
GYDTSVGWFN YSDEKVRENC HKALSEGFTA MKLKVGSADP ERDIRRAHIV REVAGDNAKV
MLDANQQWNL PNAISICKKL SSMNPYWIEE PTHPDDVLAH QTLAKEIAPV KLALGEHVPN
KVIFKNYLQA NAAAFIQVDA VRVGGVSEFL TISLLCKKFG IPVVPHVGDM GQLHQHLVLY
NHMGMGHEAL FLEHIPHLQK HFVHPARIRN GVYETPQEPG SSCDLIKF
|
|---|
| |