| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1790 |
|---|
| Symbol | |
|---|
| ID | 8225361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2199195 |
|---|
| End bp | 2200781 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644929642 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003086194 |
|---|
| Protein GI | 255035573 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.066565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TATTACTCTT TACAGTCATG CTCTTACAGT TCAGCGCCTG TAAAAACGAA
GAATTTTTTG AACTGGAAAG ACCTGTGCAA AGTCCCTGGA CGAAACTCAG CGAGTTCGAC
CGGGCGGTGA TCGGGCCTTA TGCGCTCCTG TTCGCCAAAG GGGATTGGGG CAACGTGTAC
AATTACTGGT ATTTGTATAA AAACGCAGTA GCCGACGATG TAGCGTGGTC CACGCCCGGG
GATGGCACCT GGGGCTGGTA CCGGGATACC GAGGCGAACA AGGCCTGGAC GGATGATATT
TTCAACACCA GCTACAATGC GATATCGTCG GTGAATGATG CCTTGCAGTT TGTTGACGAT
GCCGGCGGCG CGCCATTTCC CAAGATCACA GCCGATGATC AAAAGCATAA CCTGGAAAGG
ATCGTGGGCG AATTGCATTT TCTGAGGGGT TTCGCGTACT ATATGGCGGC TACCACATTC
TGCACCGCTT ACGTTCCCGG CGGCCCGAAC AATGCCAGGG AAATTCCGCT GCGCACCACC
AAAGCGACTT CTTACGAAGA TGCATCCACG CCCAAGATCG GTACTACACA GGAAATCTGG
GACCAGGTGC TGGCTGATTT CGACAAGGCA TACCAGATGC TGCCGGAGCG ATTTGTAGCG
GGCAAAATGC ATGCTTCCTA CCAGGCGGGC CGTGCCAACA AATTTGCCGC GGCGGCCATG
CTGGCGCGTG CGCATTTCGC GATGGGTAAC TATCCCAAAG CTTTGGAATT TGCTTCGTTT
GTGATTGATA AAAACGGCGG TGACTATGAT CTGAGCGAAG AGCCGATCGA GGCATTCAAC
AAAAGCATGC TGGCGCGCGG CAAGGAAACG ATTATGTACA TTCCCAGCTA CGACCTCACT
TACGGCAAGC AAAACCTGCA TGCGACCTGT TTTTCCAATA TGTTTCAAAA AACGGTGTGC
GGCTGGACGG CCACGCACAT GGACTACGAA ACATTGAAAA GACTGGGCTG GATGCAGAAT
CCGAAGTCGG ATACCACCAT TGGCATCGCG GCAAAAAGGG ACAAACGCTT CACGCAGCTC
TGCTTCGTGC GCGAGCCGGC CAATGTGCCC CAGGCACTGC GCCTGCCGAA CCGGTATTAT
GAAACCCGCG TAAACCTCAC CTGGCGCACC ATCGTCTCCG ACAAATCGGC CCGGGGACCG
GAAGCGGGCT ATACCAACGT GCCGCAGATC AGGCTGGCCG AAATGTACCT CACGCGTGCA
TCCTGTGCAT TCAAAGCCGG TGATAAAAAG CAGGCCGCTG CGGATTTGAA CATCGTCCGG
AAACGCGCCT GGAATGCTGC CGTAGCCAAA GTTGCCTACG AATCTTCACC GAATTTCGTG
ACGGAAAGCA ACGTCACGGA GCAAATGATC GGCGACGAAA GGCTGATTGA AATGTTCTGC
GAAGGCGACC GGATCGACTA CCTCAGGGCG ATGAAAAAGG AGGTAGGCAA CGGCGACCGC
GGCGCCGGAG CGACGCCTTA TACTTCAAAA GCGTTCGTGT GGCCGGTGCC GGTGGTGGAG
CGAAGTTTGA ATAATGGTTA CCAATAG
|
|---|
| Protein sequence | MKKILLFTVM LLQFSACKNE EFFELERPVQ SPWTKLSEFD RAVIGPYALL FAKGDWGNVY
NYWYLYKNAV ADDVAWSTPG DGTWGWYRDT EANKAWTDDI FNTSYNAISS VNDALQFVDD
AGGAPFPKIT ADDQKHNLER IVGELHFLRG FAYYMAATTF CTAYVPGGPN NAREIPLRTT
KATSYEDAST PKIGTTQEIW DQVLADFDKA YQMLPERFVA GKMHASYQAG RANKFAAAAM
LARAHFAMGN YPKALEFASF VIDKNGGDYD LSEEPIEAFN KSMLARGKET IMYIPSYDLT
YGKQNLHATC FSNMFQKTVC GWTATHMDYE TLKRLGWMQN PKSDTTIGIA AKRDKRFTQL
CFVREPANVP QALRLPNRYY ETRVNLTWRT IVSDKSARGP EAGYTNVPQI RLAEMYLTRA
SCAFKAGDKK QAAADLNIVR KRAWNAAVAK VAYESSPNFV TESNVTEQMI GDERLIEMFC
EGDRIDYLRA MKKEVGNGDR GAGATPYTSK AFVWPVPVVE RSLNNGYQ
|
|---|
| |