| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1713 |
|---|
| Symbol | |
|---|
| ID | 8225284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2088758 |
|---|
| End bp | 2091976 |
|---|
| Gene Length | 3219 bp |
|---|
| Protein Length | 1072 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644929567 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003086119 |
|---|
| Protein GI | 255035498 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGTT TTATGCTGGC CATGCTGGCG CTATCCCCTC CATTGCACGC ACAGCATGCC
GGCATTTCGG AAAGAGTGCA GCCGATGAAG ACCTACCCCT ACTCCGACCC CAGCCCGCTG
CCGGTAATGG GTATTGGGAA GAAAGTGGCG CCATTTTATC CATACAACGT TTTTGACGGC
TATACCAACA AGAGTACGAC GCAAAACTGG AAGATCGTGG AGCTGGAAAA CCCGTACATC
AAAGTGCAGG TGTTGCCCGA GGTAGGTGGT AAAGTGATGG GCGCGGTGGA GAAATCTACC
GGCGAGGAAT TTGTGTATAC CAATCACGTG ATGAAATTCC GCGCGATCGG TATCCGCGGC
CCCTGGACGA GCGGCGGCAT CGAGCACAAC TTCGGGCTCG ACCTCGGCCA TGCGCCCTGG
GCAGCCGCTC CGGTGGATTA TGTGATGCAA ACCAATGCGG ACGGCAGCGT TACCTGCACC
GTAGGCGGCC TGGACCTCGC CTCGCGTACG CAATGGCGGG TGAAAATTGT ACTTCCGAAA
GACAAAGCCT ATTTCGAAAC CCAAAGCCTT TGGTATAATC CCCTGCCCCT CCACGATGCC
TATCTTTCGT GGGAAAACGC CGCATTCAGG GCTTCGGACG ACATGCAGTT CTTTTTTCCG
GGGACGCACC ACGTAGGGCA TGACGGCAAT GCGAGTCCGT GGCCGTTGGA TGAAAAGGGC
GTGGATTTGT CTTATTACAA GAACAATAAT TCCGGCGGCG ACAAATCTTA CCACGTCGTG
GGGACGCATA CCGAATGGTT TGGCGGCTAC TGGCACGACC GCAAGTTCGG TTTCGGGCAT
TGGGCGCCCT ACTCCGACGC GCCCGGCAAA AAACTGTGGA TCTGGTCGCG CGCACGAGAA
GGGGCGATTT GGGAGGATTT GCTGACCGAT AAAGACGGGC AATACATTGA GGCACAGTCG
GGTGTGACAT TGAACCAGGC GGCGGAGCGC AGCGGGTTTC ATAGTCCGTT TAACCAAAAA
TCACTAGGGC CGTATTATTC CGAAACCAAA ACAGAATACT GGTTCCCCGT CAAAGGTTCC
GGCGGGATGG CCGACGCCTC ACCCTATGGC ACGCTCAATG TGGTAGCGGG CGGGGATAGC
CTGAAAATAT ACCTGAACCC TATTTCGGCC ATTCGCGATA CGCTGAAAGT GACTATGGGC
GGGCAGACGG TCCATCGCGA ACTGCTTTCG CTGAAACCGA TGGATGTGTA TTCAAAAGCG
ATTGCATTGC CGCAATCCGG GGCGAATGGT AAGCCCGTGC GCGTGGCCGT CGGCAACGAC
CGGCTGGTGT GGGCTTCACG TCCTGAAAAA GTGCTGGATC GGCCGCTGCT TTCCGCCGAC
AAACAGGATT TCCATTCGGC AGAACGGCTT TTTGAGCTGG CCGAGGATGA ACATGCGATG
CGCAACTTCG AGGGCGCGCG CCAGCGTTAC CAGGCAGTTT TGGAAAAAGA AGCCACGCAC
AGCGGCGCAT TGATCCGCCT GGCCGAGTAC CATTACCGCA AAGGCGAATA TGCGCAGGGA
CTGGATTTTG CCCGGAAGGT TATGGCCGAA AACACCTATC ATGGCGGCGC CAACTACCTG
TACGGCGCAC TTCACCGCAA GCTCGGCGAC CTCACCAAAG CGGAAGAAGC ATTGTCCGTA
GCGGCCTGGA CGATGGAATA CCGCTCCGGC GCCTACACGC AGCTAGCGGG CATTGCCTTA
CAGAAAAACG ATTTTGAAAA AGCCGAAAGC GACGCGCGGA AAGCATTGGA CTATAACCGC
AATAACCTCG CGGCCTACCA GTTGCTCGGT ACCGCGCTCC GAAAACTCAA CAAACCGGAA
CAAGCCATCG AGACGTGGAA AGCATTGCTG GCTATCGATC CGCTGAGCCA TTATGCGCAT
TTTGAACAAT ACCTGCTTGA CCCGAGGCAG GCCAACCGCG CCACTTTCCA GGATGCGATC
CGCAACGAGC TGCCGCATGA AACCTATCTG GAACTGGCGA TGGACTATGT GAACCAGGGG
CAAAATGCCG AGGCTAAGCA GCTCCTGGCG CTGGCCCCGG CGTACCCCAC CGTTTCATAC
TGGCTGGCCT ATCTTCACCG CGACTCGAAT CCATCGGAAA GTAAAAAGCA TTTGCAAAAT
GCCATTGCCA TGTCCGCCGA GCGGGTTTTT CCATTCAGGA CTGAGAGCAT TCCCGTATTG
ATTTGGGCTG AAAACCAGCA TTCCTCGTGG AAAAACCGCT ATTATCTGGG GCTCATTTAC
TGGCATATCA GCGACAAGGA GAATGCCGGA AAGCAATTTG CGGCGTGCCA AAACGAGCCG
GATTATGCGC CTTTTTACAT GGCAAGAGGC ATTTTATTCC AAAATGAAGC CCCGGGCAAG
GCGCAGGCTG ATTTTGTGAA AGCTAACCAA ATGAACGCCA AAGAATGGCG CAGCTGGCAT
TACATTACCC AGTTTTATCA TAGTCAAAAA TCGGAGGAAA AAGCGCTTGA AAACGCCCGG
AAGGCATTCG AGCGCTTTGC TGACAATCCC GTAATCGGTA TCGACTACGC CAAATCGCTG
CTCGATGCCG GGAAGTTTGA GGCGAGCTTA AAAATACTCG ATAAAGTGCA GGTACTGCCA
CAAGAAGGCG CGCGGGAAGG CCATACTTTG TACGTGACGG CCCACCTGGC CAATGCATTG
GCATTGGCAG AAAACAAGAA ATACAAGGAT GCATTGAAGT CGCTCGAAAA GGCCCGCCTG
TGGCCGGAGC ACCTCGGTAC CGGCAAGCCG CACGAGCCCG ACACCCGGCT GATCGATTAC
CTAGCGGCTT ACTGCGAAGC GCAACTCGGC CATGCGGAAA AGGCGCGCCG GTACGAGCAG
GCGATCGTCG ATTATTCCCT GAATCCCGAC AAGGCAGGCA ACCGCAATGC ATTCAGTAAC
TATTTGGGTG TGAACTTGCT GCGCAATGCC GGCAAGCAGG ATGTGGCCGA AAAATACCTG
AAAGGCTGGA AAACGGAACA GGATTCCTTG CGAAATTGGG AGCTTACCAA AGGCTCCGAC
GCGCCGGAAG TGCAATGGGT AATGGCCAGG GCCGAGGGTG ACGACAGCCG CGCCGCGCAG
CTTCAAAAAG AGCTGACAGC GACTAAAAAG TATAACATAA CCAGCCTCTT TTTCAGGGCT
CTTAACCTGG CAGCAATGCG CAAAAAGGAA GATCAGTAA
|
|---|
| Protein sequence | MAGFMLAMLA LSPPLHAQHA GISERVQPMK TYPYSDPSPL PVMGIGKKVA PFYPYNVFDG
YTNKSTTQNW KIVELENPYI KVQVLPEVGG KVMGAVEKST GEEFVYTNHV MKFRAIGIRG
PWTSGGIEHN FGLDLGHAPW AAAPVDYVMQ TNADGSVTCT VGGLDLASRT QWRVKIVLPK
DKAYFETQSL WYNPLPLHDA YLSWENAAFR ASDDMQFFFP GTHHVGHDGN ASPWPLDEKG
VDLSYYKNNN SGGDKSYHVV GTHTEWFGGY WHDRKFGFGH WAPYSDAPGK KLWIWSRARE
GAIWEDLLTD KDGQYIEAQS GVTLNQAAER SGFHSPFNQK SLGPYYSETK TEYWFPVKGS
GGMADASPYG TLNVVAGGDS LKIYLNPISA IRDTLKVTMG GQTVHRELLS LKPMDVYSKA
IALPQSGANG KPVRVAVGND RLVWASRPEK VLDRPLLSAD KQDFHSAERL FELAEDEHAM
RNFEGARQRY QAVLEKEATH SGALIRLAEY HYRKGEYAQG LDFARKVMAE NTYHGGANYL
YGALHRKLGD LTKAEEALSV AAWTMEYRSG AYTQLAGIAL QKNDFEKAES DARKALDYNR
NNLAAYQLLG TALRKLNKPE QAIETWKALL AIDPLSHYAH FEQYLLDPRQ ANRATFQDAI
RNELPHETYL ELAMDYVNQG QNAEAKQLLA LAPAYPTVSY WLAYLHRDSN PSESKKHLQN
AIAMSAERVF PFRTESIPVL IWAENQHSSW KNRYYLGLIY WHISDKENAG KQFAACQNEP
DYAPFYMARG ILFQNEAPGK AQADFVKANQ MNAKEWRSWH YITQFYHSQK SEEKALENAR
KAFERFADNP VIGIDYAKSL LDAGKFEASL KILDKVQVLP QEGAREGHTL YVTAHLANAL
ALAENKKYKD ALKSLEKARL WPEHLGTGKP HEPDTRLIDY LAAYCEAQLG HAEKARRYEQ
AIVDYSLNPD KAGNRNAFSN YLGVNLLRNA GKQDVAEKYL KGWKTEQDSL RNWELTKGSD
APEVQWVMAR AEGDDSRAAQ LQKELTATKK YNITSLFFRA LNLAAMRKKE DQ
|
|---|
| |