| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1584 |
|---|
| Symbol | |
|---|
| ID | 8225155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1902380 |
|---|
| End bp | 1905913 |
|---|
| Gene Length | 3534 bp |
|---|
| Protein Length | 1177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644929440 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003085992 |
|---|
| Protein GI | 255035371 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.268471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.21051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA ACCTTTTGAC CCGCCTTCCG GTGGGCAGGC AGGCGCATTA TGCCGGCCGG
ATACTGAGAA CTATGACCAG GATTCTACTT TTGCTCACCA TCACGCTTTC CCACGTTACG
GCCGACGGGT TCAGCCAAAA GTTCTCCTTT CATGCCAAAA ATGCCCCGCT GAAAGTCGTC
ATGCGGAACA TCGAAAAGCA GACTGGCTAC CTGTTCCTTT ACGACGAGCT CGACCTTCCC
CAGGCAAATA ATGTGTCGGT ACGCTTCAAA AACGCGTCTA TCGACGACAT TCTCGCCACC
GTTTTCAAAG ACATGCCGCT GTCGTACCGC ATTTTCCAGC GGAACGTTGT TTTGAAAAAA
GTAGTGAAAA CACCCCTTCA TGAAACCGGA CTGCCCGCCC GCATTCCGGG CGCGGAACCG
GGCATTCAGC TTACCCAGCG GACGATCGAA CCCTTACCGG CGCGGCTCGA CCGCACGCTA
CAGGGGAAGG TTACCGACGA AAACGGCAGC CCGTTCCCCG GCGTGAGCAT TGTCATCAAA
AACTCGCAGA CAGGCACGGC CACCGACGCA GCCGGGGAGT TCCGCCTCAG CATTCCCGAC
GGGGAGCCGG AACCGGTGAT CGTGGTGAGT TTTGTAGGAT ATAAAAACCA GGAGATCGCG
GTCGGTAATA GGCTGGAAGT GAATATTGCT ATGGCAGTGG ACACCAAGGC ATTGAACGAC
GTGGTGGTGA TCGGCTACGG CACGCAGAAG CAGAGCAGCA TTACCGGCTC GGTGGCGTCG
CTGCCGATGA AGAATGTGGC CAATCAGCCG CTTACCAGCC TCGACCAGGC CCTGGGCGGG
CAAATTGCAG GTGTGAACGT GGCGCAAACC AAAGGTGCCC CGGGCGGGGG CGTGTCCGTA
CGGGTACGCG GCACGGGGTC CATCGGGGCG GGTAACGAGC CATTGTATGT GATCGACGGC
TTTCCCGTGT CGGATGGTTT TAACAGTAAT TTAAATCCAC TGGCGTCCAT CAATCCCAAC
GACATCGAAT CCATTGAAAT ACTGAAAGAT GCCTCGGCGG CGGCCATTTA CGGCTCCCGC
GGCAGTAACG GCGTGGTGCT GGTGACGACG AAGCGCGGCA AGTCGGGGAA ATCGGTTGTG
CAGCTGGATA CCTATTATGG ATTTCAGCAG GTGGCCAACA AAATCGACAT GCTCAATGCC
CGCGAGTATG CCGAGTTCAA CACCGAAGCC CGCAATAATG CGTGGGTGGA CCGCGGCGGA
AAGGCAACCG ATCCCAACAG CGTGCGCCCG GCGGCGCTGC AAATCCCGGA GATGTTTGCC
AACCCGGAAA CACTCGGCAA AGGCACCGAC TGGCAGGATG AGGTTTTCCG CACGGCGCCG
ATCCAGAACT ATCAGTTGTC GCTGTCGGGC GGGAATGATA AAACGACATT CTTCACTTCG
GGGGCTTATT TCAAACAGGA CGGCATTGTG ATGAACACGG GCTTCGAGCG GTATTCGGCG
CGGGTGAACC TCGACCATAA GGCATCGCGC CATGTAACCG TGGGCATGAA CCTCTCGCCC
TCGTTCGCTT CGAGCCGGCT GCTGCCCGTG GAAGACCAGG TTTTTTCGGG CGGTATATTG
GGTTCCGCAT TGTCGCTGCC GCCTACCGTG CCGGTTTACA ATCCCGACGG ATCGTTCACG
ACATTGCTCG GGCCATCACC GTATAACATC GGGGTGATCG ACAACCCCGT AGCCATCGCC
AGCAAAATCA AGAACAAGCG GACCGTTTTC AGAACCCTTG GAAATGTGTA CGCCGAAGCC
ACCATTATCA ACGGCCTCAA ATTCAGGACC TCTTTCGGGA TCGATTACTC CGACTCCCGC
GACAATGCCT ATTATCCGTC CGATTTGGGC TGGAATGGAG TGCCGGCGCC GGTACAGGCC
AGGGCGTCAG CTTCAACGGG CCGCGACTTG AACTGGCTCA ATGAGAACAT TTTGACCTAC
AAAAAGACAT TCGGCGAAAA GCACGAGCTC GACCTGCTTG CCGGATTTAC CGCTCAAAAA
GCCAGGTACG AAGCGGCTTC GCTGAATGCC ACCAACTTCC CGACCGACCT CGTGCCGACG
CTGAATGCAG GCCAGGTTAC CAGCGGCGGC ACCGCCGTTT CGGAATGGTC GCTGCTTTCG
ATGCTGGCGC GGGCCAACTA CACCTATGCA GGTAAATACC TGTTTTCGGC TACCATGCGC
CGCGACGGGT CGTCACGCTT CGGCGCGCGC AACAAATGGG GCACGTTCCC GTCGGCTTCG
GTGGGCTGGT ACATTTCGGA AGAGCATTTC ATGAAATCGC AGCACGTGGT GAGCGATCTG
AAACTGCGGG CGAGCTACGG GCTGGCGGGT AACAATACCA TCGGTAACTA CAACCACATC
GGGCTCCTCA GCAACCGCCG TTACAGCTTC GGCGAGGGCG CGGGGGCGCT GGCTTACGGG
CTCTACCCGG GATCGATCAG CAATGAGCAG CTGGGCTGGG AAATGATGCA CCAGTTCGAT
ATCGGCGTCG ATTTCTCGTT GCTGCGCAGC CGGCTGAGCT TTACCATTGA TTTTTACAAC
AAAAACACCA CCGACCTGCT CCTGAACGTG CCCGTACCGG CGTCTACCGG CTATGAAACC
GCCTTGCAGA ACATCGGAAA GCTCAATAAC CGGGGCTGGG AGTTCAGTGT CAATTCGCGG
AATTTCACCG GCGCATTCAA ATGGTCGACG GCGTTCAATA TTTCCTTTAA CCGCAATAAA
GTAATGAAGC TGGGGCCGTC CGGCAACCCG ATTATCTCCA AAAGCCCGTC TTTCAGTCCC
AACACCCACA TTACCAGGAT CGGCTCGCCC ATCGGGAGTT TCTGGGGTTA TGAGGCGATC
GGCGTTTACC AGTCGCAGGA AGATGTGGAT AGCAGCCCGA GGGTAGGAGG TAACACCGGA
TCGCGGCCGG GCGACCTGAA ATTCAGGGAT ATAGACGGCG ATGGCGCCAT TACGCCCAGC
GACGTCACGA TCATCGGCGA CAATGCGCCC GATTTCTTTT ACGGCATCAC CAACAATTTC
TCCTATGGCC CGTTCAGCCT CAGCATTCTC GGCGACGGCG TGCAGGGTAT CCAGCTGCTG
AACGGCTCGC GTCGGAATAT CGGACTGGTG AATGGCAGTT ACAGCCGCAA GGACGTCCTT
GGCCGCTGGC AGTCGCCCGA GCAGCCGGGT GATGGCCGCA CGCCGCGTGC CAATGTGGCG
CCTACCGGCG GCAACGTGAG CTACGTGTCG AGCCTGCTCG TGGAAAACGC ATCTTTTTTC
AGGATCAGGA ACATCAACCT GCGGTATAGC CTGCCCGAAA AACTGGCGAA GGCGGTTTGT
CTTCAGAATG CAAGCGTGAG CCTGTCGGTA CAGAATGCGT TCACATTCAC GAAGTACCGG
GGCTACAACC CCGAGCAAAG CCTGAACGGC AGCAGCTCGC TCACGCCCGG CGTCGATTTC
AACGGCTATC CGCTGGCGCG CACATTCACC CTTGGTCTGA ACCTGACATT ATAA
|
|---|
| Protein sequence | MKINLLTRLP VGRQAHYAGR ILRTMTRILL LLTITLSHVT ADGFSQKFSF HAKNAPLKVV
MRNIEKQTGY LFLYDELDLP QANNVSVRFK NASIDDILAT VFKDMPLSYR IFQRNVVLKK
VVKTPLHETG LPARIPGAEP GIQLTQRTIE PLPARLDRTL QGKVTDENGS PFPGVSIVIK
NSQTGTATDA AGEFRLSIPD GEPEPVIVVS FVGYKNQEIA VGNRLEVNIA MAVDTKALND
VVVIGYGTQK QSSITGSVAS LPMKNVANQP LTSLDQALGG QIAGVNVAQT KGAPGGGVSV
RVRGTGSIGA GNEPLYVIDG FPVSDGFNSN LNPLASINPN DIESIEILKD ASAAAIYGSR
GSNGVVLVTT KRGKSGKSVV QLDTYYGFQQ VANKIDMLNA REYAEFNTEA RNNAWVDRGG
KATDPNSVRP AALQIPEMFA NPETLGKGTD WQDEVFRTAP IQNYQLSLSG GNDKTTFFTS
GAYFKQDGIV MNTGFERYSA RVNLDHKASR HVTVGMNLSP SFASSRLLPV EDQVFSGGIL
GSALSLPPTV PVYNPDGSFT TLLGPSPYNI GVIDNPVAIA SKIKNKRTVF RTLGNVYAEA
TIINGLKFRT SFGIDYSDSR DNAYYPSDLG WNGVPAPVQA RASASTGRDL NWLNENILTY
KKTFGEKHEL DLLAGFTAQK ARYEAASLNA TNFPTDLVPT LNAGQVTSGG TAVSEWSLLS
MLARANYTYA GKYLFSATMR RDGSSRFGAR NKWGTFPSAS VGWYISEEHF MKSQHVVSDL
KLRASYGLAG NNTIGNYNHI GLLSNRRYSF GEGAGALAYG LYPGSISNEQ LGWEMMHQFD
IGVDFSLLRS RLSFTIDFYN KNTTDLLLNV PVPASTGYET ALQNIGKLNN RGWEFSVNSR
NFTGAFKWST AFNISFNRNK VMKLGPSGNP IISKSPSFSP NTHITRIGSP IGSFWGYEAI
GVYQSQEDVD SSPRVGGNTG SRPGDLKFRD IDGDGAITPS DVTIIGDNAP DFFYGITNNF
SYGPFSLSIL GDGVQGIQLL NGSRRNIGLV NGSYSRKDVL GRWQSPEQPG DGRTPRANVA
PTGGNVSYVS SLLVENASFF RIRNINLRYS LPEKLAKAVC LQNASVSLSV QNAFTFTKYR
GYNPEQSLNG SSSLTPGVDF NGYPLARTFT LGLNLTL
|
|---|
| |