| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1460 |
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| Symbol | |
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| ID | 8225031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1734150 |
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| End bp | 1737719 |
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| Gene Length | 3570 bp |
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| Protein Length | 1189 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644929319 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003085871 |
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| Protein GI | 255035250 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.198313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT TGTATCCTAA CTATGCTTAT TGGCAGATCC TTATGAGATT CAGTTGTATG
CAACTCATCA TTGCTGCACT CCTGACGACC GTGGCCGTGG CTGGTGTTAC CGAAGCGCAG
GAGGTCCTGA ATAACCGTGT GACGATCCAG GTGCAGAACC AGGACGTCCG TAAAGTGTTG
TCAGCGATAG AAGACCAGGT TAAAATCAAA TTTCTGTACA GTTCCAGTCT GATCAAGGCG
GAGCGGAAGG TAAGCGTGAA TGTCCGGCAG GAACAGCTGG GCGCCGCGCT GAAAACCATC
CTGACGCCTT TGAACCTCGA TTTTGAAGTC TCAGGCAAGC AGATCATCCT GAAAAGGGTG
AAAATGCCCG TCGAAAGGCT GAACCCGCAA AGCTACAAGT CGGCGACCGT AGACCGGACT
ATTTCAGGGG TGGTTACCGA TGCGAGCGGC TCCTTCCTTC CGGGCGTTTC GGTGGTGGTG
AAAGGCACCT CCCGCGGTAC AGGTACTGAT GCCGACGGCG CTTACAAAAT CGACGCGCCG
GATGGCAATG TGACCCTTAC ATTCAGCTTT GTAGGATTTA CTTCCAAAGA TGTGGACGTA
GCCGCAGGCC AGAATGTGCT CGACGTGACG CTCACGCAGG ACGAAAAACT GCTGAACGAA
GTGGTGGTGG TAGGTTATGG AACCGCCAGC CGCAAGGACC TCACCGGTGC GGTATCGATC
GTGAAAGTAT CGGAACTGAC CGAGCAGCCG AATGCCAACC TGAGCAACCA GCTGCAAGGC
CGTGCCTCCG GTGTGACCGT CCTTACTTCC GGCCAGCCGG GACAAGCGCC GCAGATCCGT
ATCCGCGGTA TCAACTCGTT CGGAAACAAC ACGCCATTGT TCGTGGTGGA CGGCGTGCCT
ACCCAGGATA TCAACAACCT GAACCCCAAT GACGTGGCTT CGATGCAGGT ATTGAAAGAT
GCCGGTTCGG CTTCCATTTA CGGTTCGCGC GCTTCCAACG GGGTAGTGAT CATTACCACC
AAGCGTGGCC AGGGCAAAGT GAAAGTAAGC TACGACATGT TCTACGGCAC ACAAACCGTT
CCGAAAGGCA ATGTGTACGA CATTCTTTCG CCGCAGGGAA TGGCCGACCT GAAATTCCTC
GCATTGAAAA ACTCGGGAGC GGCGATCAAC GATCCACAGT ACGGCAGCGG AGAATCGCCT
GTGCTTCCCG ACTACATCGT GCCTACCGGT GCGAAAGAAG GCAGCGTGGA CCTTTCGAAA
TATTACGTGA ACCCGAACTA CACCGACAAA GCGGATATGG ACTCCTTTTA CCGCATTGTG
AAGGCCAACA AGCAGGGTAC CGACTGGTTC CACGAGGTGT TCAAGAATGC GCCGATCCAG
AGCCACAACC TCTCGGTGAG CGGCGGCGGC GAGCAGGGTA ACTACCTGTT TTCGTTCAAT
CATTTCAACC AGCAGGGTAA CCTGATGAAC ACTTTCCTGA AACGCTACAC GATCCGCGCC
AACAGCCAGT ACAACATCAC GAAAAACATC CGCGTGGGTG AAAACATCGC GCTTACCCTC
GTGAACAACC CGCGTACGGG TATCCTCGAA GAAGGCGGTG GTATCGGTAT GGCTTACCGC
ATGCAGCCGA TCATCCCGGT GTACGATATC CAGGGTAACT ATGCCGGTTC ATTCGGTAGC
GGCCTGGGTA ATGCCAAAAA CCCCGTCGCG ATCCGCGACC GCGCTCGCAA CAACCGTGGG
GTGGTTAACA GCCTGTTTGG TAACATGTTT GCAGAGGTGG ATTTCCTCAA AGATTTCAAC
TTCCGTACAA GCTTCGGTGG CGGGCAGTTC ACTTATGCGG AGAATACATT TGCCTATCCT
GAATGGGAGA ACTCCGAAAA CGTGACGACC AATTCCTACT CGGAACGCGT GAACTCGGGC
TACAACTGGA CCTGGACCAA CACCGTTACC TACGAGCACT CGTTTAACGA CAAGCACAAT
GTGAAAGTGC TTTTGGGAAC GGAAGCATAC AACAGCACCT ACCGCGAAGT AGGCGGATCG
ACGCAGAACT ATTTCTCTTT CGACCCTAAC TACACCAGCC TTTCGACCGG TTCGGGAACA
CCTACCAACT TCTCCAACCG TTCGGCAGAT GCATTGTTCT CCTACATCGG CCGCATTGAC
TACAATTTCA AAGACAAATA CCTTTTGAGC GGTACATTAC GCCGCGACGG TTCTTCGCGC
TTTACCTCGC AATACGGCTG GTTCCCGGCA GTGAGTGCGG GATGGAGGCT GAAAGAAGAG
GCATTCATGC GCTCGGCAAC CTGGCTTACC GACCTGAAAA TCCGCGGTGG ATGGGGGATA
ATGGGTAACC AGTTCAATGT GGACCCTGCG AATGCATTTA CTACCTACGG TCAGAACAGG
AGCTTTGCAT TCTACGACAT CAAAGGAACC GGAAACAGCA CGGTGCTGGG CTTCCAGCGC
ACCCGCGTAG GTAACCCGAA CGCCAAATGG GAGGGTAACA TCAACTCCAA CATCGGTATC
GACGCGCAGT TGTTCAACGG AGCCATTGAT TTCACGATCG ACTACTATCA GAAGAACATC
GACGACCTGC TTTTCTCACC TGAACTCGCA GGAACCGTGG GCCAGGGAAC TGCACCCGCT
GTGAACATCG GTAAGATGAA GAACAAAGGT ATCGATATGT CGATCTACGG CGAAAAGAAC
ATTGGCAAGG ACCTGAAACT GAATGCCACC GTTACGCTTA CGACTTATAA CAACAAAATC
GTGAAAATCA CCGACGGTGT AAGCTATTTC GACCAGGAAG GCCGCCGTTT CAATGGCAGC
ACGATCGTTC GCAACGCGGT GAACCACTCG ATCGGCCAGT TCTTCGGGTA CAACATCGTG
GGTTTCTGGA ACTCGCAGGC GGAAATCGAC GCGGCTAACG CGCAGGCTGC TGAAAAGAGC
GGTAACCCGG CGGCCATTTA TCAGAACGAA GTGAAAGTAG GACGTTTCCG CTATGAGGAT
GTGAATGGCG ACGGCATTAT CACCGCCGAC GACCGCACGT TCCTCGGTAA CCCAAGCCCT
AAGTTCAGCT ACGGTCTGAA TATCGGTGCT ACCTATAAAA ACTTCGATTT CGGTATCTTC
CTTTACGGTG TACAGGGCAA CCAGATCTGG AACAACCTGA AATGGTGGCA CGACTTCTAC
ACCAACTTCC AGGGCGCAAA AAGCAACACG GCATTGTACG ATTCCTGGAC ACCCGAGCGC
ACCAACGCTA CGGCGCCTAT TCAGGAAAAC ACCGGTTCTT TCAGCACCAC CAACGTGCCC
AACTCTTACT ACGTGGAAAA CGGCTCTTAC CTGCGCGCCA AAAACGCACA GATCGGCTAC
ACACTGCCTA AGAGCCTGAC CCAGGCGCTG AAAATCGACC GCCTGCGCGT GTATGTGCAA
ACGGCCAACC TGTTCACGAT CACGAAATAT TCCGGTCCGG ACCCAGAGGT TGGACAAAGC
CAGGTGGCTG GTTCTACGGC ATTCGGTCTG GACGAAGGGG TTTATCCAAA CACGCGCCAG
TTCCTGGTTG GTTTAAACCT GACATTCTAA
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| Protein sequence | MKKLYPNYAY WQILMRFSCM QLIIAALLTT VAVAGVTEAQ EVLNNRVTIQ VQNQDVRKVL
SAIEDQVKIK FLYSSSLIKA ERKVSVNVRQ EQLGAALKTI LTPLNLDFEV SGKQIILKRV
KMPVERLNPQ SYKSATVDRT ISGVVTDASG SFLPGVSVVV KGTSRGTGTD ADGAYKIDAP
DGNVTLTFSF VGFTSKDVDV AAGQNVLDVT LTQDEKLLNE VVVVGYGTAS RKDLTGAVSI
VKVSELTEQP NANLSNQLQG RASGVTVLTS GQPGQAPQIR IRGINSFGNN TPLFVVDGVP
TQDINNLNPN DVASMQVLKD AGSASIYGSR ASNGVVIITT KRGQGKVKVS YDMFYGTQTV
PKGNVYDILS PQGMADLKFL ALKNSGAAIN DPQYGSGESP VLPDYIVPTG AKEGSVDLSK
YYVNPNYTDK ADMDSFYRIV KANKQGTDWF HEVFKNAPIQ SHNLSVSGGG EQGNYLFSFN
HFNQQGNLMN TFLKRYTIRA NSQYNITKNI RVGENIALTL VNNPRTGILE EGGGIGMAYR
MQPIIPVYDI QGNYAGSFGS GLGNAKNPVA IRDRARNNRG VVNSLFGNMF AEVDFLKDFN
FRTSFGGGQF TYAENTFAYP EWENSENVTT NSYSERVNSG YNWTWTNTVT YEHSFNDKHN
VKVLLGTEAY NSTYREVGGS TQNYFSFDPN YTSLSTGSGT PTNFSNRSAD ALFSYIGRID
YNFKDKYLLS GTLRRDGSSR FTSQYGWFPA VSAGWRLKEE AFMRSATWLT DLKIRGGWGI
MGNQFNVDPA NAFTTYGQNR SFAFYDIKGT GNSTVLGFQR TRVGNPNAKW EGNINSNIGI
DAQLFNGAID FTIDYYQKNI DDLLFSPELA GTVGQGTAPA VNIGKMKNKG IDMSIYGEKN
IGKDLKLNAT VTLTTYNNKI VKITDGVSYF DQEGRRFNGS TIVRNAVNHS IGQFFGYNIV
GFWNSQAEID AANAQAAEKS GNPAAIYQNE VKVGRFRYED VNGDGIITAD DRTFLGNPSP
KFSYGLNIGA TYKNFDFGIF LYGVQGNQIW NNLKWWHDFY TNFQGAKSNT ALYDSWTPER
TNATAPIQEN TGSFSTTNVP NSYYVENGSY LRAKNAQIGY TLPKSLTQAL KIDRLRVYVQ
TANLFTITKY SGPDPEVGQS QVAGSTAFGL DEGVYPNTRQ FLVGLNLTF
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