| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1421 |
|---|
| Symbol | |
|---|
| ID | 8224992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1674936 |
|---|
| End bp | 1678370 |
|---|
| Gene Length | 3435 bp |
|---|
| Protein Length | 1144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644929281 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003085833 |
|---|
| Protein GI | 255035212 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0101171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGA CTTTTTACCA GTTACTGTTG ATCAGCCTGT GCTCGGTGGT GGCGGTGGCG
AGCCATTCGC CGGCCCAGGA GCTGCTGAAC CGCGACGTGA CGCTGGACCT CAAAAACGTA
ACGCTGAATG AAGCCCTCAC CCGTCTTGAA CAAGGCGCAA AGGTGAAATT CGCGTACAGC
AGCGGTTTGG TGAACCTGCA AAAGACCGTC AGCGTGGAAG CGCGGCAGGA AAAGCTCTTC
GCCGTACTCG ACCGCCTGCT GCTGCCGCTG GACATCAACT ACCGCGTGCG CAACAACCAG
ATATTGCTCT CCCGCGCGCC GAAGAAAACC AGTGAATTGC CTGCTGCCCA TGCGACCGAA
ATGCTCGCTG CCGCCGACCG GACCGTGAAG GGCACCGTAA CCTCGCCCGA AACCAACGAA
CCGCTGCCAG GCGTGAGCAT TATCCTGAAA GGCACCCAGC GCGGCACCAC CACCGACGCC
GCCGGCAAGT TCCAGCTCGA TGTGCCGGAC GAGAACGCGA CGCTCATCTT TTCGTTCGTC
GGCTATCTCT CGCAGGAAGT GGTCGTCGGA AACCGCACCG ATATCAGCAT TGCTTTGCAG
CTGGATACCA AGGCATTGGA CGAAATTGTG GTGGTGGGCT ACGGCACGCA GAAAAAATCG
ACGCTTACGG GCTCCATTGC GGCCGTGAAA GGCAGTGAAA TTGCCGAAAA CCCGGTCCCG
AACATTTCCA ACTCCATTGC CGGACGCGTG GCCGGCGTAA GTATGCGCCC GAATGGCGGC
CAGCCGGGCA ATGATTCGCC CGAAATCCAT ATCCGGGGCA TTGGTACCAC GGGCAATAAC
AAGCCGCTGG TGGTCGTGGA CGGCGTAATC CGCGACAATA TCAACCAGAT CGACCCCAGC
TCCATTGAAA CCGTGACGGT GCTGAAAGAT GCGGCGGCCG TTGCACCCTA CGGACTGGGC
GGCGCGAACG GCGTATTGCT TATCACGACG AAGAAAGGGG CCAGCGGCGC ACCAACGTTA
ACTTTCGGCG CATATTATGG TTCTCAAACG CCCACTTATT ATCCAAAACT GCTGAGCGCC
CAGGACTACA TGCGGCTGAA AAACGAAGCC TACCGCAATG AAAATCCAAC GGGAACGCAA
CTGCCTTTCG CGACCGATCT GGTGGAAAAC TACGTGAACC TGAACCGCGA AGACCCGGAC
AAATATCCGA TCAGCAACAC GAAAGACCTC GTGAATATGA ATGCCCCAAT GCAGAACTAC
ACATTGCAGC TCAGCGGCGG GTCGGAGCGG ATCAAATACC AGACGGGTTT CGGGTTTCTG
AAACAGAACG GGATGTTCGA TCCGGTGAAA TACATGCGTT ACAGCTACAA CATGAACCTC
ACTGCCGAAG CGACCAAAAC CACGACGGTT TCGCTGTCAC TGATCGGCTC CGTGGAGCGG
GTATCGTCGG TGGATACAGC GGTGTCGGCC GGAAATCTGT TCCGTAACGG GTTCAAATAC
ATTCCGATAC GTGCATTGTA TTACAGCAAC GGTTTATGGG GCGAATTTGC AGGCAACTCG
CCGGTAGGGG TTTTGAATGC AGGTTATACC AAAAATTCCA ACAATACTTT GCTCACGACC
ATCGGCATCG AGCAGAAGCT GCCGTTTATC AAAGGGCTCA GCATCAAAGG CACATTCAGC
TACGACCCGA GCCAGCGCAC GAAGAAGGGT TATCACAAAC CGTTTTATTA CTACACCCAG
GACCTGACCA CGACGCCCTA CACCTACAAA CGCGAGATTT CGACCGCGGA GGGCGGTGCA
GCGGCATTTT CCTGGCTGGC GCAGCAGTTT ATCAAAACCC AGACATTTAC TTACCAGGGT
TATCTCAATT ACCACAACAC TTTCGGCAAG CACGATTTCA CGGGGCTCAT CGTGGCCGAG
GCGCGGAACA ACACCTATGA GCTGTTTTCG GCCCGGCGCA ACAACTTCGC CGTGGACGTG
GACGAGCTGA ATATGGGTAG TTCCAACAAA AACGATTTCG ACAATGGCGG CACGTCGTCC
ACGGGCAGTC AGATCGGCTA CGTGTACCGC GTGGGCTATG CATATGCCGG CAAATATCTG
CTCGAAGCCT CGGGACGGTA CGACGGCCAT TATTATTTCG CGCCCGGCAA GCGCTGGGGG
TATTTCCCGG CATTCTCGGC GGGCTGGGTG ATTTCGGAAG AGAATTTTCT CAAAAACGGC
TTCAACTGGG TGGATAACCT GAAACTGCGG GGCTCGTGGG GGAAATCGGG TAACCTGGCG
GGAACGGCAT TCCAGTACCT GACGGGCTAC AACCTCAATG GCAATGCGTA CGCATTCGGC
CCGGGATCGA TGGTGCAGGG CGCCGTGGTG CCCAACGAAG CGAACAAGAA CATTACCTGG
GAGATTTCTA CCAAAACCGA TATCGGTCTG GAAGCATCAC TCTGGCGCGG TTTGCTGACG
ATCGAAGCCG ATTACTTCCA TGAAAAACGC ACCGGAATGC TGCTGCCGCC GGCTGTGAGC
GTGCCGGTAG AGTATGGTCT TGCATTGGCC GACGAGAATG GCGGGATCAT GGAAAACAAT
GGCGTCGAGC TCAGCCTCGG CACGCAGTAC CGCTTTCAGA ATGACCTTCG ACTGGGTATT
AACGGCAATG TGAGTTATGC CAAAAACAAG ATGATCAAGG TGTTTGAAAC GGCTGCAACC
CGCAATAATC CCAACCGCAG CCGCACAGGC CGGGCATTGG GCACGCAATT CGGCTACAAA
ACCGACGGCC TGTTCACGAC CGACGACGAC AAGAACGACG ACGGACTGAT TAACTCCGCC
GACGGCTACA ACGTAACGCA GTTTGGTGCA TTACGCCCGG GCGACATTCG CTATGTGGAT
GTGAGCGGCC CGCAGGGTGT GCCCGATGGC AAAATTGATT CGAATGACGA GGTGATGATC
GGAAAACCGG TGTACCCGCT GTTAACCTAT GGTTTGAACG CCACCGCCGA TTGGAAAGGC
TTCGACCTGA ACCTGTTCTT CCAGGGCTCG TCGCTGGCCA GCCTCGACAT CCGCCAGTTC
CAGACCATTC CGTTCAATAA CAACAACAGC AATTCGAGCT ACGAATATTA CGACAACCGC
TGGACACCCG AAACGCAGGA TGCGCGCTAC CCGCGTGCCA CCCAGGCGCC CTATGCGAAC
AACACCCAGC TGTCGGATTT CTGGATGACG AGCACTGCGC ATTTGCGCCT CAAAAACGCC
ATCGTCGGCT ACACATTGCC CAAAAGCATT ACCCAGGCCA TTCGCATCCA GAATGTACGT
GTGTATGCCT CCGGCCAGAA CCTGCTGACA TTCAGCAAGC TGAAATTCAT GGACCCGGAA
GTGGGCTACA CCGATCGCGA AACCGCCTAT CCGAACCAGC GGGTTTACGT ATTTGGGCTT
AATGTGACAT TCTGA
|
|---|
| Protein sequence | MRLTFYQLLL ISLCSVVAVA SHSPAQELLN RDVTLDLKNV TLNEALTRLE QGAKVKFAYS
SGLVNLQKTV SVEARQEKLF AVLDRLLLPL DINYRVRNNQ ILLSRAPKKT SELPAAHATE
MLAAADRTVK GTVTSPETNE PLPGVSIILK GTQRGTTTDA AGKFQLDVPD ENATLIFSFV
GYLSQEVVVG NRTDISIALQ LDTKALDEIV VVGYGTQKKS TLTGSIAAVK GSEIAENPVP
NISNSIAGRV AGVSMRPNGG QPGNDSPEIH IRGIGTTGNN KPLVVVDGVI RDNINQIDPS
SIETVTVLKD AAAVAPYGLG GANGVLLITT KKGASGAPTL TFGAYYGSQT PTYYPKLLSA
QDYMRLKNEA YRNENPTGTQ LPFATDLVEN YVNLNREDPD KYPISNTKDL VNMNAPMQNY
TLQLSGGSER IKYQTGFGFL KQNGMFDPVK YMRYSYNMNL TAEATKTTTV SLSLIGSVER
VSSVDTAVSA GNLFRNGFKY IPIRALYYSN GLWGEFAGNS PVGVLNAGYT KNSNNTLLTT
IGIEQKLPFI KGLSIKGTFS YDPSQRTKKG YHKPFYYYTQ DLTTTPYTYK REISTAEGGA
AAFSWLAQQF IKTQTFTYQG YLNYHNTFGK HDFTGLIVAE ARNNTYELFS ARRNNFAVDV
DELNMGSSNK NDFDNGGTSS TGSQIGYVYR VGYAYAGKYL LEASGRYDGH YYFAPGKRWG
YFPAFSAGWV ISEENFLKNG FNWVDNLKLR GSWGKSGNLA GTAFQYLTGY NLNGNAYAFG
PGSMVQGAVV PNEANKNITW EISTKTDIGL EASLWRGLLT IEADYFHEKR TGMLLPPAVS
VPVEYGLALA DENGGIMENN GVELSLGTQY RFQNDLRLGI NGNVSYAKNK MIKVFETAAT
RNNPNRSRTG RALGTQFGYK TDGLFTTDDD KNDDGLINSA DGYNVTQFGA LRPGDIRYVD
VSGPQGVPDG KIDSNDEVMI GKPVYPLLTY GLNATADWKG FDLNLFFQGS SLASLDIRQF
QTIPFNNNNS NSSYEYYDNR WTPETQDARY PRATQAPYAN NTQLSDFWMT STAHLRLKNA
IVGYTLPKSI TQAIRIQNVR VYASGQNLLT FSKLKFMDPE VGYTDRETAY PNQRVYVFGL
NVTF
|
|---|
| |