| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1342 |
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| Symbol | |
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| ID | 8224913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1577556 |
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| End bp | 1580699 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644929203 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085755 |
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| Protein GI | 255035134 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00542277 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.165874 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC AACTTCTATC AAAACATTTA TGCAGGCAAT CCTTCCGGAC CAGGCTCTGG
CGCGTGTGCA TTGCATTGTG CGCGGTGCTG CTCGTACAGA CTGCCGCGTT GGCCCAGGTA
GCCGCGGACG AGGTGCTCGT CGGCGGCGAA GTGAAGGATG AAAAAAACAG CGCGATCCCC
GGCGCAAGCA TCGTGCTCCA AGGCACCGCG AAGGGCACAA CGACCGACGC CGACGGAAAA
TTTTCACTCG CCGTCCCTAA GTCGGGATCG GTGCTGATCG TGAGTTTTTT GGGTTACAAA
AGGCAGGAGG TCGCGGTCGG TAACCATACC GATTTCAGCA TTCGCCTGGA ACCCAGCTCC
GACGACTTGC AGGAAGTGGT GGTGGTAGGC TACGGCACGC AGCGCAAGCA AACGCTCACC
GGCGCCATTT CAAACATTGT TTCGGAACAA ATCAAAACCA CCACGCACAC GAGTCTGGCG
CAAAGCCTGC AAGGCAAGGT GGCCGGGGTG CAGATCCGCC AGAATTCCGG CGAACCGGGC
TCGTTCAGCA CGAACATTAA TATACGTGGT TTTGGAGAGC CGTTGTATGT GGTAGATGGC
GTGGCGCGCG ACGGCGGTTA TGAATTTCAG AAAATCAACC CGGACGACAT TGAGAGTATT
TCGGTGCTGA AAGATGCTTC CGCGGCGATT TTTGGTATCC GTGCGGGGAA TGGCGTGGTG
ATCGTGACGA CGAAAAAAGG GAAGCAGGGC AAGCCAAAGT TCAGCTACAA CATGGTGTAC
GGCCGCCAAA GCCCCACCGA TGTGCCCCGG ATGACCAACG CATTGCAATG GGCCGAAATG
CGGAACGACG CTGCCAAGAA CCTGGGAGAA AACCCGGTGT ACTCGCCCGA AGAGATCGAA
AAGTTCCGCT CCGGCGCGCC CGGCTACGAG GGCACCGACT GGTACAAGGA AACGCTGAAC
AGATCGGCCG GCCAGCAGCA GCATTTCATT TCGGCATCGG GCGGCGAGGG CGTGGTGAGC
TACTTCACGA GCTTTGGCTA CCAGAAAGAA AACGGCCTGC TCAAAAGCCG CGATATGGGT
TATCAGAAAT ATACCTTCCG TTCCAATATT GGTATTGATT TAACCAAAAA CCTGAAAGCG
GACCTGATCC TTTCGGGGCT GTTTGATAAG CGGGAGCAGC CGGGTGATAA CTTTTTTAAC
ATCTATAAAG GAACCCGCAT TGCGTTGCCT ACCGAGCGTC CTTTCGCCAA TGACAACCCC
AAATACCCCG CATTACTGAG CGGCGGCTAT AATCCGGTGG CATTGGCCGA CCGGGAACTC
ACGGGCTACT CGCAGGAGGT GAACAAGTTC TTTCAATCGA CATTCGCACT CACCTACACC
GTGCCATTCG TGCCGGGGCT GCGCATTAAG GGGCTCGTGG CCTACGACAG CAACAACTAC
CGCGGCAAGT CGGTGTCGAA GGCCTACAAC CTGTACACCT ACGACGCCGC AACGGACAAG
TACACCGCGC ACGCCCAGCG CAATCCTTCG CGCATCGGCA ACAATTTCAC GGACAATAAC
CGCATTACCT TCCAGGGACA GCTGTTTTAC AACACCGTGA TCGCGAAAAA CCACAACCTC
GGCGCGACGC TCGTGTACGA GCAGCAGGAA TCGCACAACC GCTGGGCTGG GCTCGGCCGT
GAATATGCAT TCTTCACCAA CGACCAGATC GACCAGGCAG GACTCAACAA CCAGACCACG
AGCGGTTCCG AGGCGGAATA TGCCAGCCAG TCGTACGTCG GCCGGTTGAA TTATGATTTC
AAAGAGAAAT ACCTGCTGGA AATCGCCGCG CGCTACGATG GCTCCTACCG CTACCATCCC
GACCGCCGCT GGGGGCTATT CCCGGTCGTA TCGGCGGGCT GGCGCGTGTC CGAGGAAGGT
TTCATGAAAC AAATCCCATT CATTTCGATG CTGAAACTGC GGGGCTCTTA CGGCCTTGTG
GGTGCGGATG CAGGTGCGCC GTTCCAGTAT GTGCCCGGCT TCTCGCTCAC CGGCGGCGGC
GGATATGAGT TTACGAACGG CAATTACACC ACCGGCGCCG CTTCCCCGGC AATCGTGAAC
GAAAAGCTGA CGTGGTTTAA GTCAAACATC CAGGACGTGG GTATCGACGT GGGCCTTTGG
GATAACAAAA TCGACCTTAC TTTCGACGTC TACCAACGCG ACCGCAAGGG CCTGCTCGCC
CGCCGGAACG TGTCGCTGCC CAACACATTC GGCGGCACAT TGCCCGAGGA AAACCTGAAC
AGCGACCGTG TGCGGGGAAT CGAGTTTTCA GCCGGCTATA ATGGACAGAT CCGCGATTTC
AAATATGGGA TTTCCGGTAA CTTCAACTTC GCACGCACGC AGAACCGGTA CGTGGAGCGG
GGCGAGTTCC TCAGCAGCAT GGACAAATGG CGCGGCGGAG CTACCAACCG GTGGAATGAC
GTGGTGTGGG CCTACCAGCT CGAAGGCCAG TTCCAGAGCA AGGACGAGGT CATTTACGCA
CCCATTCAGA ATGGCGACCT GGGCAACACC CGCGAGCTGC CGGGCGATTT TAAATACAAG
GATGTGGACG GCAACGGCGT GATCGACGGC AACGACGCCA TTCCGCTGTT CTTCGGCGGC
GATCCCAAAA TGTACTACGG CGTCACGCTC AACGCGTCGT GGAAGGGCTT CGATTTTACG
GCATTGTTCC AGGGTTCGGG GAAATACAGC GTGCGCTTCC GCGAAGTGTA TGCCGAAGTC
TTCGCATTCC GCGGCAACAC GCCGGAATAT TTCTATGACA GATGGCAGCA GTCGCCCGAC
GGCCAGTGGA TTCCCGGCGA ATGGCCGGCT TCCCGCTTCA ACTACAATGT GGGCGCCATG
TACGCCGAAA GCGGTGCGTG GCGGAAGGAT GCTTCCTACC TGCGTTTCAA AAGCGCGCAG
CTCGGCTATA CGTTCAACCT GTCGTGGCTG AAAAAAATCG GTATTGACGA TGTACGCGTG
TACGGCAATG CGCACAACAT CTTCACCTGG GCCGATCCGT TCGTGAAGCC CTTCGATCCT
GAAAAAGTGG AAGGCTTATT CGGCGCGGGA CTTACCTACC CGGTAACGCG GAGCTTCAAC
TTCGGGATCA ATGTCAACTT TTAA
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| Protein sequence | MNKQLLSKHL CRQSFRTRLW RVCIALCAVL LVQTAALAQV AADEVLVGGE VKDEKNSAIP
GASIVLQGTA KGTTTDADGK FSLAVPKSGS VLIVSFLGYK RQEVAVGNHT DFSIRLEPSS
DDLQEVVVVG YGTQRKQTLT GAISNIVSEQ IKTTTHTSLA QSLQGKVAGV QIRQNSGEPG
SFSTNINIRG FGEPLYVVDG VARDGGYEFQ KINPDDIESI SVLKDASAAI FGIRAGNGVV
IVTTKKGKQG KPKFSYNMVY GRQSPTDVPR MTNALQWAEM RNDAAKNLGE NPVYSPEEIE
KFRSGAPGYE GTDWYKETLN RSAGQQQHFI SASGGEGVVS YFTSFGYQKE NGLLKSRDMG
YQKYTFRSNI GIDLTKNLKA DLILSGLFDK REQPGDNFFN IYKGTRIALP TERPFANDNP
KYPALLSGGY NPVALADREL TGYSQEVNKF FQSTFALTYT VPFVPGLRIK GLVAYDSNNY
RGKSVSKAYN LYTYDAATDK YTAHAQRNPS RIGNNFTDNN RITFQGQLFY NTVIAKNHNL
GATLVYEQQE SHNRWAGLGR EYAFFTNDQI DQAGLNNQTT SGSEAEYASQ SYVGRLNYDF
KEKYLLEIAA RYDGSYRYHP DRRWGLFPVV SAGWRVSEEG FMKQIPFISM LKLRGSYGLV
GADAGAPFQY VPGFSLTGGG GYEFTNGNYT TGAASPAIVN EKLTWFKSNI QDVGIDVGLW
DNKIDLTFDV YQRDRKGLLA RRNVSLPNTF GGTLPEENLN SDRVRGIEFS AGYNGQIRDF
KYGISGNFNF ARTQNRYVER GEFLSSMDKW RGGATNRWND VVWAYQLEGQ FQSKDEVIYA
PIQNGDLGNT RELPGDFKYK DVDGNGVIDG NDAIPLFFGG DPKMYYGVTL NASWKGFDFT
ALFQGSGKYS VRFREVYAEV FAFRGNTPEY FYDRWQQSPD GQWIPGEWPA SRFNYNVGAM
YAESGAWRKD ASYLRFKSAQ LGYTFNLSWL KKIGIDDVRV YGNAHNIFTW ADPFVKPFDP
EKVEGLFGAG LTYPVTRSFN FGINVNF
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