| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1210 |
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| Symbol | |
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| ID | 8224781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1436304 |
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| End bp | 1438682 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644929072 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003085624 |
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| Protein GI | 255035003 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00167448 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000869825 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAAAAA ATCTGGTGAT CGTAGAGTCA CCGGCGAAGG CCAAAACCAT TGAAAGTTAC
CTTGGGCAGG ATTTCACTGT CAAGTCCAGT TTCGGACATG TCCGTGACCT CCCGGAGCAT
GATATGGGTG TTGATGTTGA GCATGGTTTC CAACCCTCTT ACGAAATCTC CTCCGATAAA
GTCAAAGTCA TTTCAGAGCT CAAAAAACTG GCAAAAGATG CAGAAGTTTG GCTCGCAACC
GATGATGACC GCGAGGGAGA AGCGATTTCC TGGCATTTGA AAGAAGCGCT GGGGCTTCCC
GACAATACCA AGCGGATCGT GTTTCGTGAG ATCACCAAAA CTGCTCTGCG GAACGCCATC
GAAAAGCCGC GGACCATCGA CACGGCCCTG GTAGACGCCC AGCAGGCACG CCGTATCCTC
GACCGCCTCG TGGGCTACGA GCTTTCCCCG GTACTCTGGA AAAAGATCCG GATCGGTAAA
TCGAACCTCT CGGCCGGCCG TGTACAATCG GTAGCCGTAC GTATAATAGT GGAGCGCGAA
CGTGAGATTG ATGCATTTAA AAGCAAAAGC AGTTTCAGGG TAACCGCGCA TTTCGACCTG
GGCAATGGCA AAGTACTGAA TGCGGAGCTC GCCAAGAACA TCCCTACCGA GCAGGAAGCG
CAACAGTTCC TCGAAAAATG CGTCGGGGCC GAATTCTCGA TCCGTAACCT TGAAGTAAAA
CCAGCCAAAA AATCACCTGC ACCGCCATTC ACAACTTCTA CCCTACAACA GGAAGCATCC
CGCAAGCTGA GTTTTTCCGT TGCGCAAACG ATGACCGTCG CGCAGCGTCT GTACGAAGCC
GGTAAGATTT CCTATATGCG TACCGACTCG ACTAACCTGT CGGAAGAAGC GTTGGATAAG
TCAAAGCAGC AGATCACGAA AGAATACGGG ATCGATTACT ATAACCGCCG TATTTTCAAA
ACCAAGTCCG AATCCGCACA GGAAGCGCAC GAAGCGATCC GTCCTACCGA TTTTTCTACG
CTGCTAGGCA GCAGCGACCG CAACGAGCAA CGCCTGTACG AGCTGATCTG GAAGCGCGCC
ATCGCATCGC AGATGTCGGA CGCCCAGCTG GAACGCACCA CGGCCACGAT CGGCATTTCG
ACCACTTCGG AAGAGCTGGT AGCGCAAGGC GAGGTGATCA AATTCGAAGG TTTCCTGAAA
GTATACCTCG AATCGAGCGA CGACGAAGGT GACGAGGAAC AAAAAGGAAT GCTCCCGCCG
CTGAACATCG GCCAGATCCT CAAACTGGCG GATATGAAGG CAACAGAGCG CTTCACCCGT
AACCCGCCAC GCTATACGGA GGCGAGTTTG GTAAAAAAAT TGGAAGAAAT GGGAATCGGA
CGGCCATCTA CATACGCGCC GACGATTTCG ACGATCCTGA AACGGGAATA TATAGTAAAA
GAAGACCGTC AGGGTTTTGA AAGGGAATTC AAAGAAATCA CCCTTGCCAA TGAGCAGATC
AAGAGCAAGG TAAATAAAGA AGTATACGGC TCGGAGAAGG CCAAGCTCTT CCCGACCAGC
ACCGGTATGG TGGTGAACGA CTTCCTCGTA AGCCATTTCC AGGACATTGT CGATTATTCC
TTCACCGCGA GCGTTGAAAA AGACTTTGAC CACATTGCCG ACGGCCAGCT GGAATGGCAG
CAGATGATCA AGAACTTCTA CACGCCGTTC CAAAAGAAAG TAGCCGAGGC ACGTGAGGAA
GCCATTGACA AGAGCCTGAC CTCACGTGAA CTGGGCGAAG ATCCTGCAAC GGGCAAAAAA
GTATCCGTGC GGATCGGGAA ATACGGCCCC TATGTGCAGA TCGGTGATGT GGAAGATGAA
GAAAAACCGC GTTTTGCCAG CTTGCAGAAA GGCCAGCTGA TGGAAACCAT CACATTGGAC
GAAGCATTTG AGCTTTTCAA ACTGCCGCGC CAGGTGGGTT TCTTTGAGGA TAAAGACATG
ATCGTGAACG TCGGCAAATT CGGTCCGTAC GTGAAACACG ACGGCAAATA TTACTCGCTG
GCCAAAACGG ATGATCCGAT GGCGGTGACA GAAGACCGAT TGGTTGAAAT CATTGAAGAA
AAGCGCTTGC AGGACTCCAA CCGCACCATT AAAGAATTTG CGGAAGATCC CGAGGCGAAG
GTTTTGAACG GCCGTTACGG GCCCTACATT GCTTTTGGAA AAAAGAATGT AAAAATCCCG
AAAGGCACCG AGCCGGCATC GCTCACTTAC GAGCAGGTGT TGAAACTGGC CGCTGAGACG
CCCGACAAGC CTGCGGGACG GGGCGGCGCG AGAAAACCGG CCGCGGCCAA AGCGCCTGCG
GCGAAGAAGC CGGCTGCCAA GAAAGCCGCC AAAAAGTAG
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| Protein sequence | MSKNLVIVES PAKAKTIESY LGQDFTVKSS FGHVRDLPEH DMGVDVEHGF QPSYEISSDK
VKVISELKKL AKDAEVWLAT DDDREGEAIS WHLKEALGLP DNTKRIVFRE ITKTALRNAI
EKPRTIDTAL VDAQQARRIL DRLVGYELSP VLWKKIRIGK SNLSAGRVQS VAVRIIVERE
REIDAFKSKS SFRVTAHFDL GNGKVLNAEL AKNIPTEQEA QQFLEKCVGA EFSIRNLEVK
PAKKSPAPPF TTSTLQQEAS RKLSFSVAQT MTVAQRLYEA GKISYMRTDS TNLSEEALDK
SKQQITKEYG IDYYNRRIFK TKSESAQEAH EAIRPTDFST LLGSSDRNEQ RLYELIWKRA
IASQMSDAQL ERTTATIGIS TTSEELVAQG EVIKFEGFLK VYLESSDDEG DEEQKGMLPP
LNIGQILKLA DMKATERFTR NPPRYTEASL VKKLEEMGIG RPSTYAPTIS TILKREYIVK
EDRQGFEREF KEITLANEQI KSKVNKEVYG SEKAKLFPTS TGMVVNDFLV SHFQDIVDYS
FTASVEKDFD HIADGQLEWQ QMIKNFYTPF QKKVAEAREE AIDKSLTSRE LGEDPATGKK
VSVRIGKYGP YVQIGDVEDE EKPRFASLQK GQLMETITLD EAFELFKLPR QVGFFEDKDM
IVNVGKFGPY VKHDGKYYSL AKTDDPMAVT EDRLVEIIEE KRLQDSNRTI KEFAEDPEAK
VLNGRYGPYI AFGKKNVKIP KGTEPASLTY EQVLKLAAET PDKPAGRGGA RKPAAAKAPA
AKKPAAKKAA KK
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