| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1057 |
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| Symbol | |
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| ID | 8224627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1253134 |
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| End bp | 1255275 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644928918 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_003085471 |
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| Protein GI | 255034850 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.204835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.993933 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTTTA ATATAGTTAC CAAGACTATA ACCTTACCGG ACGGCAGGGA AATCACAATT
GAAACAGGAA AATTAGCGAA GCAAGCCGAC GGATCGGTGG TTGTCAGACT GGGTAACACC
ATGTTGCTGG CTACGGTTGT TGCTAACAAG GATATTAAAG AAGGTCTCGA CTTTCTTCCG
TTGTCAGTTG ATTATCAGGA GAAATTCGCA TCTGCCGGAC GTATTCCCGG AAGCTTCCAG
CGCCGTGAGG GCAAACTTTC CGATCACGAA GTATTGACCA GCCGCCTCGT TGACCGTGTA
TTGCGCCCAT TGTTCCCCGA CGATTACCAT GCGGAAGTTC AGGTAAATAT CCTTCTGATC
TCTGCGGACG CAGAAGCATT GCCTGACGCA CTCGCTGCAC TGGCGGCATC AGCTGCTTTG
GCCGCATCCG ATATTCCTTT CGGCGGACCG GTTTCAGAAG TTCGCGTTGC GAAAATCGAC
GGCGAATACG TGATCAACCC AGGCACGACT GCATTGGCTA ATGCAACTCT CGACCTGATG
GTAGGCGCGA CGTATAACGA TATCGCGATG GTGGAAGGTG AAATGAGCGA GGTTTCAGAA
GAGGAAGTGA TCGAAGCATT GAAAATCGCA CACGAAGCTA TCAAAACCCA ATGCCTTGCT
TTGAAAGAAT TCGAAGCGGC GGTGGGCAAA ACTGAAAAAA GAGAATACGT AGGCGATCCT
GCGGACGATG CACTTGAAGC ACGTCTGCGC GAATTCGCTT ATGGCAAAAT ATACGCGGTA
ACGCAACTGG GTTCAACCAA CAAAACTGTA AGAAAAGACG GTTTCAAAGC TGTTTGGGAA
GAATTCAAAA CAACCATTAC CGAAGAAGAG GCCGCAGAAT TCAACGAAGG ACTTGCGAAA
CGTTATTTTA ATGACCTCGT TTGGGAAGCT TCACGCCGCC TGGTACTGGA CGAAAGAAAA
CGCCTCGACG GCCGCGCGCT GGACCAGGTG AGGCCGATCG CTTCGGAAGT GGACTTCCTT
CCTAACGCAC ACGGATCGGC ATTGTTTACC CGCGGTGAAA CGCAATCATT GACTACCGTA
ACGCTCGGTA CCAAGCAGGA CGAGCAGATC GTGGACACCC CATTGAAATA CGGTTACAGC
AAGTTTATGC TGCACTATAA CTTCCCCGGC TTCTCAACCG GCGAAGTGAA GCCTAACCGC
GGTCCCGGCC GTCGTGAAGT AGGTCACGGT AACCTTGCAT TGCGCGCATT GAAAAAAGTA
CTTCCTGCTG AGGGGGATAA TCCATACACG ATCCGTATCG TTTCCGATAT CCTCGAATCA
AATGGCTCGT CGTCGATGGC GACTGTTTGC GCAGGTTCTT TGGCATTGAT GGACTCAGGT
TTGAAAATCA AAGCGCCGGT GTCGGGTATC GCAATGGGTC TTATCTCTGA CGAGGCTACT
GGCAAATACG CGGTTCTTTC GGACATCCTC GGCGATGAAG ATCACCTGGG CGATATGGAC
TTCAAAGTAA CCGGAACGGC CGAAGGTATC ACTGCCTGCC AGATGGATAT GAAGGTGAAT
GGCCTTTCAT TTGAAGTGCT GACAGAAGCA TTGATGCAAG CCAAAGCGGG CCGTCTGCAC
ATCCTCGGTG AAATGAACAA AACCATCACC GAAAGCCGTC CTGACCTGAA ACCACACACG
CCACGTGCTA TCGTGATCAA AATTGATCGT GAGATGATCG GTGCGGTGAT CGGACCAGGC
GGAAAAGTTG TACAAGACAT TCAAAAAGAA TCCGGCGCAA CGATCTCTAT CGAAGAGAAA
GATGGCGCAG GCTTCGTAAG TATATTCTCT GCTGATAAGT CTTCCATGGA TAAGGCAGTT
GCACGGGTTA AAGGCATCAT TCTGGTCCCT GAAATCGGTG AAATCTATTC CGGTAAAGTT
AAGTCTATCA TGCCTTTCGG AGCGTTCGTC GAGTTCCTCC CTGGCAAAGA CGGTTTGTTG
CACATTTCCG AGATCAAGTG GGAGCGCCTC GAAAAAATGG ACGGCGTTCT GGAAGTAGGA
GAAGAGGTGC AGGTGAAGCT CGTCGAAATC GACAAGAAAA CCGGCAAATA CCGCCTTTCA
CGCAAAGTAT TGTTACCAAA GCCTGAGAAC AAAAAAGATT AA
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| Protein sequence | MLFNIVTKTI TLPDGREITI ETGKLAKQAD GSVVVRLGNT MLLATVVANK DIKEGLDFLP
LSVDYQEKFA SAGRIPGSFQ RREGKLSDHE VLTSRLVDRV LRPLFPDDYH AEVQVNILLI
SADAEALPDA LAALAASAAL AASDIPFGGP VSEVRVAKID GEYVINPGTT ALANATLDLM
VGATYNDIAM VEGEMSEVSE EEVIEALKIA HEAIKTQCLA LKEFEAAVGK TEKREYVGDP
ADDALEARLR EFAYGKIYAV TQLGSTNKTV RKDGFKAVWE EFKTTITEEE AAEFNEGLAK
RYFNDLVWEA SRRLVLDERK RLDGRALDQV RPIASEVDFL PNAHGSALFT RGETQSLTTV
TLGTKQDEQI VDTPLKYGYS KFMLHYNFPG FSTGEVKPNR GPGRREVGHG NLALRALKKV
LPAEGDNPYT IRIVSDILES NGSSSMATVC AGSLALMDSG LKIKAPVSGI AMGLISDEAT
GKYAVLSDIL GDEDHLGDMD FKVTGTAEGI TACQMDMKVN GLSFEVLTEA LMQAKAGRLH
ILGEMNKTIT ESRPDLKPHT PRAIVIKIDR EMIGAVIGPG GKVVQDIQKE SGATISIEEK
DGAGFVSIFS ADKSSMDKAV ARVKGIILVP EIGEIYSGKV KSIMPFGAFV EFLPGKDGLL
HISEIKWERL EKMDGVLEVG EEVQVKLVEI DKKTGKYRLS RKVLLPKPEN KKD
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