| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1052 |
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| Symbol | |
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| ID | 8224622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1245932 |
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| End bp | 1248991 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644928913 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003085466 |
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| Protein GI | 255034845 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.273667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGACC ACAAAAACTT AATTCAAAAC TCCACCAACT CAGTATCTAT GGTTTTTAAA
CGCAGCGCCT CCACCGTCGG CATGTTTGTG TGTGTAGGCG CGTCTTCCGT AGTAGCCCAG
AATACGCTCA GTATTACGGA GCCGGAAGCA CACTTTCGCA ACGGCCTCGA ATATTACGCA
AAGTCGAACT ACGTGGCTGC GAGGCAGGAA TTCGGCGAGT TCCTGAATAC GCAGGACAAA
TTGCTCAGTA CGAGCGACTA TAATAAGGTT ACAGCGGAAT ATTATGTGGC TGTTACGGGC
TTGTACCTCA ATTACCCCGA AGCGGAAGTG CAGGTCGACC GGTTTGTAAA GAACCACGCG
GAGCACCCCA AGGCACAGCT CATTTACAGT GATCTGGGCA AATACTATTA TGAAAGCGGC
AACTATGAAA AGGCGATTAC CTACCTTGAA AAGGCGGTGG ATCTGCCTGG GGCAGGAGCA
GGGAGGCTGG AAAGCACCTA TCGCTTAGCT ATGTCGTATC ATAACACCAA GCAGCCCGAC
CTTGCATTGC CGTTGTTTAA TCAGGTGAAA AACGAGGCGG GTTTCGATAA TGCCGGCGAT
GCATCGTTCT ACGCAGGCGT GATCAACTAC CAGAAAAATA ACTTTGAGGA AGCGTACCAG
GATTTCAAGC GTATCGAGGA TCATCCTTAT TATAAAAACG AAGCGCCCAA CTGGATCATT
TCGTCGCTGT ACCAGCTCAA AAAGTTTGAT GAGCTACTCA CATACGGAGA ACGTATCCTC
GGCTCGCAGC GTGGGAATAC CAAGTTGGAC GACGTGGCCT TGTACGTGGC CGAAGTTTAT
TACGAGAAAG GCGATTATGC TAATGCGGTG AAAGCCTACG AGCGCTACAA GCGCATGCGG
CCCGGTGCGA TCCCCCCAAC CGTAGCATTG CATTACGGCC ATGCGCAGTT CCGTAATAAC
AACTTTGAGG GTGCAATCAC CTCTTTAAAG CCCATCGGAA ATGGCAAAGA CTCTGTTTCG
CAGTATGCAA GTTACATCCT CGGAATCAGT AACTTAAAGA CGAATAGTTT AACTAATGCT
TTAACATCAT TCGGTAACGC AGCATCTCTT GACTTTAACC CTGTTGTGAA GGAAGAAGCG
GCCTATAATC ATGCGAAGGT GCAGCTGGAA CTCGGTAACA ATGCCGATGC AGTAAAAGAG
CTGAACAATT ACATGGCTAA GTACCCGGAG AGCAAACACA CCGAGGAAGC GACCGAACTG
GTGGCAGAAG GATACGCGAA TGCAAGCAAC AGCTCGGCCG CCATAAAGTA CATTGAGGCG
CTAAAAACGC GCAATGCTAA AATAAATAGT ACATATCAGA GGCTTACTTA CAACCAGGGC
GTGGTAGATT TCAATGCAGG CCGGTTTGAG CAGGCGATTG AGATGTTCGA TAAATCACTG
AAACACCCGA TCGACGCTGA GCTTTTCAAC TCTGCATCTT TCTACAAGGC GGAGTCGGTG
TACGGGTTGA AGCGCGTGGA TGAAGCCGCG ACATTGTATA ATCAGATTGC CAAGAATCCG
AAAGCTGGCA TTTACGCACG TAAGAGCCTT TATGCCTTGG GTTACATTTA CTACAACCAG
AAAAAATACA GTCAGGCACT GCCTTACTTC CGCGATTTTA CCAACAATAT CGAGGGAATG
GAGGCCGATA TGATCGAAGA TGCGCACGCA AGGCTGGCCG ACTGTTACCT GGCGGCCAAG
AATTACAACG AGGCCATCCG TACCTACGAG CAGGTTGCTG CAAAGGGCAA AGTAGACAAG
GATTACGCAT TGTTTCAGAA AGCCCGCGCG TATGTGTACA TGAACCGCGA GGCGGAAGCG
AAACGCCAGT TTGAATTGTT GATCAGCCAG TACCCGCAGT CGAAGCACCT GGATAATGCC
TATTTCCAGC TCGCCGACAT CGATTTCCAA AACCAAAGCT ACTCGGCGGC CGTGAAGGGC
TTTACACGGA TGATTAATGA AAAACCAAAA AGCACGCTCA TTCCAGCCGC ATTGCTCCGC
AGGGCACAGT CGTACTACAA CTTGCAGGTT TACGAGCAGG CGATTGTCGA TTTCCGTAAA
ATCCTGACCG AATATTCCGA TTCACCATCG GCGGAAAGTG CGCTTGAAGG TATCCAGGAA
AGCTATTCGG CCGTGGGGCG TCCGGAGGAA TTCAACCAGG TGCTTGGAGT GGTAAGAAAG
AACAACCCGG GTAATGAGAA GCTCGAAGGC GTTGAGTTCG ATAATGTGCG CAACCTCTAT
TATGCTGAGA AATACGAGAA TGCGATCACT TCATTGCAGG AGTTTTTGAA AAGTTACCCG
GCTAGCAAGC ACCAGTATGA TGCTACCTAC TTCATCGCGT CGTCGTACGA CAAGACTAAT
CGCGTGAATG AAGCACTTCA ATATTACAGT AAAGTGGTTC AACAAAACAG GTCGCAGTTT
GTGGGCGCCG CCGCGCAGCG TTCGGCCGAG CTCGAGATCG GACGCGGCAA CTTCAACAAC
GCTGTGACGA ACTTCCGCGT GCTTTCCCGC AATGCCGAAA ACAAAAAAGA CCAGGCAACC
GCGTGGACGG GCCTCATGGA CACCTATTTC ACATTGAAGA GCTACGATTC GACGCTTTAC
TATGCGAAGG AGATCATTAA CATGGGTAAT ATCGTGCCGG CAAACCTTGG CAAGGCACAG
CTCTACCTCG GTAAAGTGCC TTACGAAAAA GGCGATCTGA GAAAGGCAGG GGAAGAATTC
AAAAAGGTAT CGGCGTCGTC CAAGGATGAA TTTGGTGCGG AAGCAGCATA CTGGTCGGCC
ATGATCCTTT ACAAAGAGAA AAAATACAAG GAGGCGGAGA CGGCTATCAT CGATATGGGC
AAGAACTTCG AAGGGTTTGA TTACTGGCGC GCGCGCTCGT TCATTCTGCT CGCAGACGTT
TACGTGGGCA TGAACGAGAA AGTTCAGGCA AAAGCGACGC TGAATTCGAT TATTGAGAAC
TCGGATGACA AGGAAGCCGT AGAACTCGCG AAAGAAAAAT TGAACCAAAT CGAAAAATAG
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| Protein sequence | MADHKNLIQN STNSVSMVFK RSASTVGMFV CVGASSVVAQ NTLSITEPEA HFRNGLEYYA
KSNYVAARQE FGEFLNTQDK LLSTSDYNKV TAEYYVAVTG LYLNYPEAEV QVDRFVKNHA
EHPKAQLIYS DLGKYYYESG NYEKAITYLE KAVDLPGAGA GRLESTYRLA MSYHNTKQPD
LALPLFNQVK NEAGFDNAGD ASFYAGVINY QKNNFEEAYQ DFKRIEDHPY YKNEAPNWII
SSLYQLKKFD ELLTYGERIL GSQRGNTKLD DVALYVAEVY YEKGDYANAV KAYERYKRMR
PGAIPPTVAL HYGHAQFRNN NFEGAITSLK PIGNGKDSVS QYASYILGIS NLKTNSLTNA
LTSFGNAASL DFNPVVKEEA AYNHAKVQLE LGNNADAVKE LNNYMAKYPE SKHTEEATEL
VAEGYANASN SSAAIKYIEA LKTRNAKINS TYQRLTYNQG VVDFNAGRFE QAIEMFDKSL
KHPIDAELFN SASFYKAESV YGLKRVDEAA TLYNQIAKNP KAGIYARKSL YALGYIYYNQ
KKYSQALPYF RDFTNNIEGM EADMIEDAHA RLADCYLAAK NYNEAIRTYE QVAAKGKVDK
DYALFQKARA YVYMNREAEA KRQFELLISQ YPQSKHLDNA YFQLADIDFQ NQSYSAAVKG
FTRMINEKPK STLIPAALLR RAQSYYNLQV YEQAIVDFRK ILTEYSDSPS AESALEGIQE
SYSAVGRPEE FNQVLGVVRK NNPGNEKLEG VEFDNVRNLY YAEKYENAIT SLQEFLKSYP
ASKHQYDATY FIASSYDKTN RVNEALQYYS KVVQQNRSQF VGAAAQRSAE LEIGRGNFNN
AVTNFRVLSR NAENKKDQAT AWTGLMDTYF TLKSYDSTLY YAKEIINMGN IVPANLGKAQ
LYLGKVPYEK GDLRKAGEEF KKVSASSKDE FGAEAAYWSA MILYKEKKYK EAETAIIDMG
KNFEGFDYWR ARSFILLADV YVGMNEKVQA KATLNSIIEN SDDKEAVELA KEKLNQIEK
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