| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0708 |
|---|
| Symbol | |
|---|
| ID | 8224277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 832196 |
|---|
| End bp | 833881 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644928581 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003085135 |
|---|
| Protein GI | 255034514 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00208572 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.375229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGG TGAACCCCTT CAAGCGGTTA TGGGACTTGA TATTGCTGGA CAGGTCGGAT
ATTTTGGCGG TGTACTTCTA TGCAATGCTG AGCGGTCTCG TCAATTTGAG TCTGCCTCTG
GGCATTCAGG CGATCATCGG TTTTGTGCTC GGCGCCTCCA TGGTAACCTC CATTTATGTG
CTGATTACCC TCGTCGTGGC CGGAGTTGTG GTGGTGGGGC TTATGCAGAT CAACCAGATG
AAAATCATCG AGAAGATCCA GCAGAAAATC TTCACCCGGT ATGCATTCGA GTTCGCCGAC
AAGATCCCCC GCTTCGACCT CATCAAAACC GACAAATTTT ACCTCCCCGA GAAAGTCAAC
CGCTTTTTTG ACGTCCTCAA TGTACAGAAG GGCTTATCGA AGCTCTTGCT CGAAGTACCC
GCGGCCAGCA TCCAGATCGT CTTCGGCCTC ATGCTCCTCG CACTCTACCA TCCCTTCTTC
ATTGTATTCG GCCTCACATT GATCGTCATC CTGACAGTCA TCTTCCGGCT CACAGGTGCA
AACGGTCTTA AAACTTCCCT TCAGGAGAGT GTCTACAAAT ACAAAACGGT GGCCTGGCTA
CAAGAAATGG CCAGGGTGAT CAATCCCTTC AAGCTCAGTT ACGACACGAA TTTCAACCTC
ACGCGGACAG ACGTCCATGT GAACAAATAC CTCAACTCCC GCACGGAGCA CTTTTCGGTG
CTGCTGCTGC AATACAAAAC GCTGGTATTC ACCAAGGTAG CGATCACGAC GGCTATGCTT
GCGGGCGGCG CTTTCCTCTT GCTGCGCCAG CAGCTGAATA TCGGGGAGTT TATTGCGGCG
GAAATCATCG TCCTGGCGGT GATCAATGCG GTGGAGAAGC TGATTATCAA CCTCGATACC
GTTTACGATG TCGTGACCGG CCTCGAAAAG CTTTCTACCG TCACCGAAAA CCTTTCGGAG
CCGGAAGGCA CGCTGTCGCT CGACGCGGCC GGCAAAGGCG TATCGATCGA AATGCAGAAC
TTTTCGTTCT CGTTTCCCGA CAATCGGAGC GTATTCCACG GCATTAACCT GAAAATTCCC
GCGGGTAGTC TGGTGGGTGT TTCAACGGTC GGCCGTTCGG GCAAATCCAC CTTCCTGAAA
ATCCTTGCGG GGCATTATCA GCATTTTACC GGTTCCCTGC TGTTCAATAA AGTGCCGTTG
TGCAATTACC GGCTGGGCGC GCTTCGGATG AGAATGGGAT TGTACCTCAA CCAGCGGGAG
GTATTCACCG GCACGGTTTG GGACAATATC ATCGACGGCA GGTGCCACAT TACCTCCGAC
GAGATCATCG ACCTGGCCGA CGCGACCGGG CTTTCGGGGT TCCTCGATCA GCTGCCGGAC
GGTTTCCAAA CCCAGGTTGC GCCCAATGGC AAGAACCTGC CGGGGCATTA TATCAAACGC
ATTTCACTCC TGAGGGCATT GCTGAACAAA CCCGGCCTGG TGTTGCTGGA AGATCCGTGG
GACGGACTGG CAGGACATGA AAAGCAGAAA TTGATGCAGT ACCTGAAAAG CAGGCCCAAC
AATGCGACCA TCATCGTGGC GGTGAACGAT CCGGCCTTCC TGGAAGCATG CGATTACCAG
ATTTTGCTTA GCAATGGCAC AGCAACATTA ACCGAGAACA TTGACAATGG ATCAGGCGAA
CTATAA
|
|---|
| Protein sequence | MEKVNPFKRL WDLILLDRSD ILAVYFYAML SGLVNLSLPL GIQAIIGFVL GASMVTSIYV
LITLVVAGVV VVGLMQINQM KIIEKIQQKI FTRYAFEFAD KIPRFDLIKT DKFYLPEKVN
RFFDVLNVQK GLSKLLLEVP AASIQIVFGL MLLALYHPFF IVFGLTLIVI LTVIFRLTGA
NGLKTSLQES VYKYKTVAWL QEMARVINPF KLSYDTNFNL TRTDVHVNKY LNSRTEHFSV
LLLQYKTLVF TKVAITTAML AGGAFLLLRQ QLNIGEFIAA EIIVLAVINA VEKLIINLDT
VYDVVTGLEK LSTVTENLSE PEGTLSLDAA GKGVSIEMQN FSFSFPDNRS VFHGINLKIP
AGSLVGVSTV GRSGKSTFLK ILAGHYQHFT GSLLFNKVPL CNYRLGALRM RMGLYLNQRE
VFTGTVWDNI IDGRCHITSD EIIDLADATG LSGFLDQLPD GFQTQVAPNG KNLPGHYIKR
ISLLRALLNK PGLVLLEDPW DGLAGHEKQK LMQYLKSRPN NATIIVAVND PAFLEACDYQ
ILLSNGTATL TENIDNGSGE L
|
|---|
| |