Gene Dfer_0707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0707 
Symbol 
ID8224276 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand- 
Start bp831369 
End bp832049 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content47% 
IMG OID644928580 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003085134 
Protein GI255034513 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.136091 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.663609 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTTC ACGTAAGTTT TCATCTGAAT GAGAAGGTCT ACCTGAAAGA CCCGGAGAGC 
AGCGAGGTGG GCAAGCAGCT TGTCAAGAAT GCTATTGATT TGATTTATGA ACTTGGTTTC 
GAGCATTTTA CCTTTAAAAA ACTGGCCGTC CAGGTGAACA CCACCGAAGC GACCGTTTAC 
CGGTATTTCG AAAACAAACA CCGGCTGCTG CTGTACATTC TGAACTGGTA CTGGAGCTAC 
ATGGAATTCC TTGTAATGTT CAAGTTGCAG AACGTTACGG ATCCTGCGCA AAAATTACAC 
GTAATTATTG CACTTCTTAC CCATGAATTG CCCCAAAGTG CGGGATCAAT GGACTATAAC 
ACGAAATACC TGAACCAGAT CATCATCAGT GAAAGCAGTA AAGTGTACCT GGTGAAGGAT 
GTGACGGAGA TCAACAAATC GGAAGTTTTC AAACCCTACA AGGACTTGTG CACGCGGATT 
GCGCAGGTCA TTTCGGAATA CAACCCGGAA TACCAGTTTC CGCGCTCGCT CAGCAGCACG 
CTTATCGAAA CATCGCATTA CCAGCAATTT TTCAGCACAT TCCTGCCCCG GCTCACCGAC 
AACCAGGGCG CCGACCAGCG CATTTTCGCC ACCAATTTCC TGACGGACCT GCTATTCAAG 
GCAATCACCA AAGCCAGTTA G
 
Protein sequence
MEFHVSFHLN EKVYLKDPES SEVGKQLVKN AIDLIYELGF EHFTFKKLAV QVNTTEATVY 
RYFENKHRLL LYILNWYWSY MEFLVMFKLQ NVTDPAQKLH VIIALLTHEL PQSAGSMDYN 
TKYLNQIIIS ESSKVYLVKD VTEINKSEVF KPYKDLCTRI AQVISEYNPE YQFPRSLSST 
LIETSHYQQF FSTFLPRLTD NQGADQRIFA TNFLTDLLFK AITKAS